Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: https://www.snat.ethz.ch
Full name:
Description: We have combined bulk RNA sequencing of developing sciatic nerves up to the adult with focused bulk and single-cell RNA sequencing of Schwann cells throughout postnatal development, extended by single-cell transcriptome analysis of the full sciatic nerve both perinatally and in the adult. The results were merged in the transcriptome resource Sciatic Nerve ATlas.
Year founded: 2021
Last update:
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Country/Region: Switzerland

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Zurich
Address:
City:
Province/State:
Country/Region: Switzerland
Contact name (PI/Team): Ueli Suter
Contact email (PI/Helpdesk): ge_tan@outlook.com

Publications

33890853
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT). [PMID: 33890853]
Daniel Gerber, Jorge A Pereira, Joanne Gerber, Ge Tan, Slavica Dimitrieva, Emilio Yángüez, Ueli Suter

Peripheral nerves are organ-like structures containing diverse cell types to optimize function. This interactive assembly includes mostly axon-associated Schwann cells, but also endothelial cells of supporting blood vessels, immune system-associated cells, barrier-forming cells of the perineurium surrounding and protecting nerve fascicles, and connective tissue-resident cells within the intra-fascicular endoneurium and inter-fascicular epineurium. We have established transcriptional profiles of mouse sciatic nerve-inhabitant cells to foster the fundamental understanding of peripheral nerves. To achieve this goal, we have combined bulk RNA sequencing of developing sciatic nerves up to the adult with focused bulk and single-cell RNA sequencing of Schwann cells throughout postnatal development, extended by single-cell transcriptome analysis of the full sciatic nerve both perinatally and in the adult. The results were merged in the transcriptome resource Sciatic Nerve ATlas (SNAT: https://www.snat.ethz.ch). We anticipate that insights gained from our multi-layered analysis will serve as valuable interactive reference point to guide future studies.

Elife. 2021:10() | 52 Citations (from Europe PMC, 2024-04-20)

Ranking

All databases:
654/6000 (89.117%)
Raw bio-data:
48/539 (91.28%)
Expression:
108/1143 (90.639%)
654
Total Rank
48
Citations
16
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Record metadata

Created on: 2022-04-20
Curated by:
Xinyu Zhou [2023-09-19]
Lina Ma [2022-09-29]
Qianpeng Li [2022-05-15]
Yuxin Qin [2022-04-20]