Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

CrypticProteinDB

General information

URL: https://www.maherlab.com/crypticproteindb
Full name: an integrated database of proteome and immunopeptidome derived non-canonical cancer proteins
Description: Translated non-canonical proteins derived from noncoding regions or alternative open reading frames (ORFs) can contribute to critical and diverse cellular processes. In the context of cancer, they also represent an under-appreciated source of targets for cancer immunotherapy through their tumor-enriched expression or by harboring somatic mutations that produce neoantigens. Here, we introduce the largest integration and proteogenomic analysis of novel peptides to assess the prevalence of non-canonical ORFs (ncORFs) in more than 900 patient proteomes and 26 immunopeptidome datasets across 14 cancer types. The integrative proteogenomic analysis of whole-cell proteomes and immunopeptidomes revealed peptide support for a nonredundant set of 9760 upstream, downstream, and out-of-frame ncORFs in protein coding genes and 12811 in noncoding RNAs. Notably, 6486 ncORFs were derived from differentially expressed genes and 340 were ubiquitously translated across eight or more cancers.
Year founded: 2023
Last update: 2023-06-01
Version: 1.0
Accessibility:
Accessible
Country/Region: United States

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Contact information

University/Institution: Washington University in St. Louis
Address: Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63108, USA.
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Country/Region: United States
Contact name (PI/Team): Christopher A Maher
Contact email (PI/Helpdesk): christophermaher@wustl.edu

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Record metadata

Created on: 2023-08-23
Curated by:
Xinyu Zhou [2023-09-12]
Yue Qi [2023-09-05]
Yuxin Qin [2023-08-23]