Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PCRMS

General information

URL: https://cci-bioinfo.uncc.edu
Full name: predicted cis-regulatory modules
Description: The PCRMs (predicted cis-regulatory modules) database holds de novo predicted CRMs and TFBSs (transcription factor binding sites) in genomes of human and important model organisms. The CRMs and constituent TFBSs were predicted by integrating all available TF ChIP-seq datasets from cell/tissue types of the organism using the dePCRM2 algorithm.
Year founded: 2022
Last update: 2022-06-03
Version: v1.0
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of North Carolina at Charlotte
Address: Department of Bioinformatics and Genomics, The University of North Carolina at Charlotte, 9201 University City Boulevard, Charlotte, NC 28223, USA.
City: Charlotte
Province/State: North Carolina
Country/Region: United States
Contact name (PI/Team): Zhengchang Su
Contact email (PI/Helpdesk): zcsu@uncc.edu

Publications

Ranking

All databases:
3438/6275 (45.227%)
Gene genome and annotation:
1040/1785 (41.793%)
Interaction:
608/1052 (42.3%)
3438
Total Rank
4
Citations
2
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Created with Highcharts 10.0.0PCRMSCRMsTFBSsgenomescis-regulatorymodulespredictedconstituenttranscriptionfactorbindingsitesdatabaseaccuratecompletegenefindTFcanregulatoryPCRMS:predictionsfacilitatecharacterizingfunctionssequencesdevelopedhttps://cci-bioinfo.uncc.edustoreshighlyunprecedentedlymapshumanmousewebinterfaceallowsuserbrowseorganismclosestsearcharoundusefulresourceresearchcommunitycharacterizeDatabaseURL:https://cci-bioinfo.uncc.edu/.

Related Databases

Citing
Cited by

Record metadata

Created on: 2023-09-06
Curated by:
Shiting Wang [2024-08-28]
Shiting Wang [2024-08-27]
Xinyu Zhou [2023-10-16]
Jane Young [2023-09-06]