Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

AAAKB

General information

URL: http://www.lqlgroup.cn:3838/AAAKB/
Full name: Abdominal Aortic Aneurysm Knowledgebase
Description: AAAKB is a comprehensive database to explore known functional genes and predict potential candidates in abdominal aortic aneurysm(AAA). A total of 378 genes and 434 SNPs were manually curated from literature resource. Annotation information was provided including basic information, function, and protein–protein interaction (PPI).
Year founded: 2023
Last update: 2023-12-15
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Nanjing Medical University
Address:
City:
Province/State:
Country/Region: China
Contact name (PI/Team): Zhiguang Shi
Contact email (PI/Helpdesk): shizg_bioinfo@163.com

Publications

38100461
AAAKB: A manually curated database for tracking and predicting genes of Abdominal aortic aneurysm (AAA). [PMID: 38100461]
Di Yao, Shuyuan Mei, Wangyang Tang, Xingyu Xu, Qiulun Lu, Zhiguang Shi

Abdominal aortic aneurysm (AAA), an extremely dangerous vascular disease with high mortality, causes massive internal bleeding due to aneurysm rupture. To boost the research on AAA, efforts should be taken to organize and link the information about AAA-related genes and their functions. Currently, most researchers screen through genetic databases manually, which is cumbersome and time-consuming. Here, we developed "AAAKB" a manually curated knowledgebase containing genes, SNPs and pathways associated with AAA. In order to facilitate researchers to further explore the mechanism network of AAA, AAAKB provides predicted genes that are potentially associated with AAA. The prediction is based on the protein interaction information of genes collected in the database, and the random forest algorithm (RF) is used to build the prediction model. Some of these predicted genes are differentially expressed in patients with AAA, and some have been reported to play a role in other cardiovascular diseases, illustrating the utility of the knowledgebase in predicting novel genes. Also, AAAKB integrates a protein interaction visualization tool to quickly determine the shortest paths between target proteins. As the first knowledgebase to provide a comprehensive catalog of AAA-related genes, AAAKB will be an ideal research platform for AAA. Database URL: http://www.lqlgroup.cn:3838/AAAKB/.

PLoS One. 2023:18(12) | 1 Citations (from Europe PMC, 2025-03-15)

Ranking

All databases:
4712/6274 (24.912%)
Gene genome and annotation:
1407/1782 (21.1%)
Genotype phenotype and variation:
671/898 (25.39%)
Pathway:
290/411 (29.684%)
4712
Total Rank
1
Citations
1
z-index

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Record metadata

Created on: 2024-07-16
Curated by:
Wenzhuo Cheng [2024-08-28]
Wenzhuo Cheng [2024-07-24]
Haochen Liu [2024-07-16]