AnimalMetaOmics


37897361	AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes. [PMID: 37897361] Ruirui Hu, Fulin Li, Yifan Chen, Chuyang Liu, Jiawei Li, Zhongchen Ma, Yue Wang, Chaowen Cui, Chengfang Luo, Ping Zhou, Wei Ni, Qing-Yong Yang, Shengwei Hu Abstract The Animal Meta-omics landscape database (AnimalMetaOmics, https://yanglab.hzau.edu.cn/animalmetaomics#/) is a comprehensive and freely available resource that includes metagenomic, metatranscriptomic, and metaproteomic data from various non-human animal species and provides abundant information on animal microbiomes, including cluster analysis of microbial cognate genes, functional gene annotations, active microbiota composition, gene expression abundance, and microbial protein identification. In this work, 55 898 microbial genomes were annotated from 581 animal species, including 42 924 bacterial genomes, 12 336 virus genomes, 496 archaea genomes and 142 fungi genomes. Moreover, 321 metatranscriptomic datasets were analyzed from 31 animal species and 326 metaproteomic datasets from four animal species, as well as the pan-genomic dynamics and compositional characteristics of 679 bacterial species and 13 archaea species from animal hosts. Researchers can efficiently access and acquire the information of cross-host microbiota through a user-friendly interface, such as species, genomes, activity levels, expressed protein sequences and functions, and pan-genome composition. These valuable resources provide an important reference for better exploring the classification, functional diversity, biological process diversity and functional genes of animal microbiota. Nucleic Acids Res. 2024:52(D1) \| 0 Citations (from Europe PMC, 2025-03-22)

AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes. [PMID: 37897361]

Ruirui Hu, Fulin Li, Yifan Chen, Chuyang Liu, Jiawei Li, Zhongchen Ma, Yue Wang, Chaowen Cui, Chengfang Luo, Ping Zhou, Wei Ni, Qing-Yong Yang, Shengwei Hu

Abstract

The Animal Meta-omics landscape database (AnimalMetaOmics, https://yanglab.hzau.edu.cn/animalmetaomics#/) is a comprehensive and freely available resource that includes metagenomic, metatranscriptomic, and metaproteomic data from various non-human animal species and provides abundant information on animal microbiomes, including cluster analysis of microbial cognate genes, functional gene annotations, active microbiota composition, gene expression abundance, and microbial protein identification. In this work, 55 898 microbial genomes were annotated from 581 animal species, including 42 924 bacterial genomes, 12 336 virus genomes, 496 archaea genomes and 142 fungi genomes. Moreover, 321 metatranscriptomic datasets were analyzed from 31 animal species and 326 metaproteomic datasets from four animal species, as well as the pan-genomic dynamics and compositional characteristics of 679 bacterial species and 13 archaea species from animal hosts. Researchers can efficiently access and acquire the information of cross-host microbiota through a user-friendly interface, such as species, genomes, activity levels, expressed protein sequences and functions, and pan-genome composition. These valuable resources provide an important reference for better exploring the classification, functional diversity, biological process diversity and functional genes of animal microbiota.

Nucleic Acids Res. 2024:52(D1) | 0 Citations (from Europe PMC, 2025-03-22)

URL:	https://yanglab.hzau.edu.cn/animalmetaomics#/
Full name:	Animal Meta-Omics landscape database
Description:	nimalMetaOmics is a multi-omics landscape database for the study of animal microbial genomes and microbiomes. The current implementation includes four modules: metagenome, metatranscriptome, metaproteome, and pan-genome.
Year founded:	2023
Last update:	2024-01
Version:	v1.0
Accessibility:	Accessible
Country/Region:	China

Data type:	DNA Protein RNA
Data object:	Animal Archaea Bacteria Fungi Virus
Database category:	Gene genome and annotation Metadata
Major species:	Salmonella bongori Campylobacter avium Alistipes finegoldii Eubacterium barkeri Vibrio adaptatus Staphylococcus agnetis
Keywords:	metagenomic metatranscriptomic metaproteomic animal microbiome

University/Institution:	Shihezi University
Address:	College of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China
City:	Shihezi
Province/State:	Xinjiang
Country/Region:	China
Contact name (PI/Team):	Shengwei Hu
Contact email (PI/Helpdesk):	hushengwei@163.com

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Database Commons a catalog of worldwide biological databases

a catalog of worldwide biological databases

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