Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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GEND000016
Basic Information Samples Gene Expression Patterns Transcriptomic Profiles Visualization

GEND000016: RNA-seq and flow-cytometry of conventional, scalp, and palmoplantar psoriasis reveal shared and distinct molecular pathways

BioProject ID:    PRJNA481993     Original Project ID:    GSE117405    

Strategy:
Species:
Homo sapiens
Tissue:
Healthy Condition:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
Disease
Environmental:
-
Spatial:
Tissue
Temporal:
-
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.99265
Median Coverage:
1.58
Max Sequencing Length:
198
#Max Replicate:
9

Gene Expression Patterns

OR
Heatmap Boxplot
Created with Highcharts 9.1.2Expression level (TPM)ENSG00000000003ENSG00000000005ENSG00000000419ENSG00000000457ENSG00000000460ENSG00000000938ENSG00000000971ENSG00000001036ENSG00000001084ENSG00000001167ENSG00000001460ENSG00000001461ENSG00000001497ENSG00000001561ENSG00000001617ENSG00000001626ENSG00000001629ENSG00000001630ENSG00000001631ENSG00000002016050100150200250300350400

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000016 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: