Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
Home Datasets Genes
Metadata
Species Projects Samples Publications
Tools
Online Analysis GEN Toolkit
Statistics Documentation Download Contact
Home Datasets
GEND000085
Basic Information Samples Gene Expression Patterns Transcriptomic Profiles Visualization

GEND000085: RNA sequencing of B cell subsets (CD11c hi IgD+ B cells, CD11c hi IgD- B cells, Memory B cells and Naïve B cells) from healthy subjects and subjects with Systemic lupus erythematosus (SLE) or Rheumatoid arthritis (RA)

BioProject ID:    PRJNA435554     Original Project ID:    GSE110999    

Strategy:
Species:
Homo sapiens
Tissue:
Healthy Condition:
Cell Type:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
Disease
Environmental:
-
Spatial:
Tissue; Cell type
Temporal:
-
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.89735
Median Coverage:
0.69
Max Sequencing Length:
146
#Max Replicate:
16

Gene Expression Patterns

OR
Heatmap Boxplot

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000085 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a
ID: GENDE000085 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v33 (GENCODE)
Data Processing:
  1. Parallel Strategy of REDItools 2.0
  2. Mismatched and multi-mapping reads deletion: Pblat
ID: GENDS000085 Download
Reference Genome: -
Genome Annotation: -
Data Processing:
  1. Alternative splicing identification: rMATS

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate