Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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GEND000157
Basic Information Samples Transcriptomic Profiles Visualization

GEND000157: Cell fixation and preservation for droplet-based single cell transcriptomics

BioProject ID:    PRJNA350512     Original Project ID:    GSE89164     Paired Dataset(s):     GEND000158 GEND000159

Strategy:
Species:
Homo sapiens
Healthy Condition:
Cell Type:
Cell Line:
Cell Number:
Biological Context:
Baseline:
Yes
Genetic:
-
Phenotypic:
-
Environmental:
-
Spatial:
Cell line
Temporal:
-
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.5326
Median Coverage:
1.47
Max Sequencing Length:
64
#Max Replicate:
1

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000157 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Extraction of cell barcodes: dropTag
  2. Read mapping: STAR v2.7.1a
  3. Data generation: dropEst

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate