Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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GEND000189
Basic Information Samples Gene Expression Patterns Transcriptomic Profiles Visualization

GEND000189: Pseudo-temporal ordering of individual cells reveals regulators of differentiation

BioProject ID:    PRJNA229164     Original Project ID:    GSE52529     Paired Dataset(s):     GEND000190

Strategy:
Species:
Homo sapiens
Healthy Condition:
Cell Type:
Biological Context:
Baseline:
Yes
Genetic:
-
Phenotypic:
-
Environmental:
-
Spatial:
Cell type
Temporal:
Time series
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.99355
Median Coverage:
0.69
Max Sequencing Length:
197
#Max Replicate:
3

Gene Expression Patterns

OR
Heatmap Boxplot

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000189 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate