Dataset - GEND000249 - Gene Expression Nebulas

A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

A data portal of transcriptome profiles across multiple species

BioProject ID: PRJNA417006 Original Project ID: GSE106481

Strategy:	scRNA Smart-seq2
Species:	Macaca mulatta
Healthy Condition:	Normal
Cell Type:	16-Cell Stage Embryo Early Blastocyst Inner Cell Early Blastocyst Outer Cell Early Morula Outer Cell Hatcded Blastocyst Inner Cell Later Blastocyst Inner Cell Later Morula Outer Cell Middle Blastocyst Inner Cell Middle Blastocyst Outer Cell
Cell Number:	94
Biological Context:	Baseline: Yes Genetic: - Phenotypic: - Environmental: - Spatial: Cell type Temporal: Development
Quality and Quantity:	RNA Type: poly(A)+ RNA Median Mapping Quality: 0.98435 Median Coverage: 0.70 Max Sequencing Length: 98 #Max Replicate: 1

Note:

GENDX:

Gene Expression Profiles

GENDE:

RNA Editing Profiles

GENDS:

Alternative Splicing Profiles

GENDC:

CircRNA Expression Profiles

ID: GENDX000249 Download

Reference Genome: Mmul_10.101

Genome Annotation: Mmul_10.101

Data Processing:

GEN Sample ID	GEN Sample Name	Sample ID	Sample Name	BioSample ID	Sample Accession	Experiment Accession	Release Date	Submission Date	Update Date	Species	Race	Ethnicity	Age	Age Unit	Gender	Source Name	Tissue	Cell Type	Cell Subtype	Cell Line	Disease	Disease State	Development Stage	Mutation	Phenotype	Case Detail	Control Detail	Growth Protocol	Treatment Protocol	Extract Protocol	Library Construction Protocol	Molecule Type	Library Layout	Strand-Specific	Library Strand	Spike-In	Strategy	Platform	Instrument Model	Cell Number	Reads Number	Gbases	AvgSpotLen1	AvgSpotLen2	Uniq Mapping Rate	Multiple Mapping Rate	Coverage Rate