Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

GEND000266: Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines

BioProject ID:    PRJNA304631     Original Project ID:    GSE75575    

Strategy:
Species:
Tissue:
Height/Length/Weight:
Isolation_source:
Development Stage:
Biological Context:
Baseline:
No
Genetic:
Mutation
Phenotypic:
Quality trait
Environmental:
-
Spatial:
Tissue
Temporal:
Development
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.9652
Median Coverage:
2.82
Max Sequencing Length:
97
#Max Replicate:
3

Gene Expression Patterns

OR

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000266 Download
Reference Genome: GCF_000004515.5_Glycine_max_v2.1.103
Genome Annotation: GCF_000004515.5_Glycine_max_v2.1.103
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: