Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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GEND000272
Basic Information Samples Gene Expression Patterns Transcriptomic Profiles Visualization

GEND000272: Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean.

BioProject ID:    PRJNA514200     Original Project ID:    GSE125103    

Strategy:
Species:
Glycine max
Tissue:
Isolation_source:
Development Stage:
Biological Context:
Baseline:
No
Genetic:
Natural variation
Phenotypic:
-
Environmental:
Biotic stress
Spatial:
Tissue
Temporal:
Time series
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.8772
Median Coverage:
1.81
Max Sequencing Length:
97
#Max Replicate:
3

Gene Expression Patterns

OR
Heatmap Boxplot

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000272 Download
Reference Genome: GCF_000004515.5_Glycine_max_v2.1.103
Genome Annotation: GCF_000004515.5_Glycine_max_v2.1.103
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: