Dataset - GEND000305 - Gene Expression Nebulas

A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

A data portal of transcriptome profiles across multiple species

BioProject ID: PRJNA316571 Original Project ID: SRP072415

Strategy:	scRNA single-cell RNA-Seq (Tang)
Species:	Oryza sativa
Tissue:	Leaf
Cell Type:	Mesophyll cell
Cell Line:	tube 1 tube 2 tube 3
Development Stage:	5 day-after-germination
Cell Number:	27
Biological Context:	Baseline: Yes Genetic: Natural variation; Hybridization and polyploidization Phenotypic: - Environmental: - Spatial: Cell type Temporal: -
Quality and Quantity:	RNA Type: poly(A)+ RNA Median Mapping Quality: 0.9812 Median Coverage: 5.33 Max Sequencing Length: 98 #Max Replicate: 8

Note:

GENDX:

Gene Expression Profiles

GENDE:

RNA Editing Profiles

GENDS:

Alternative Splicing Profiles

GENDC:

CircRNA Expression Profiles

ID: GENDX000305 Download

Reference Genome: IRGSP-1.0.47

Genome Annotation: IRGSP-1.0.47

Data Processing:

GEN Sample ID	GEN Sample Name	Sample ID	Sample Name	BioSample ID	Sample Accession	Experiment Accession	Release Date	Submission Date	Update Date	Species	Race	Ethnicity	Age	Age Unit	Gender	Source Name	Tissue	Cell Type	Cell Subtype	Cell Line	Disease	Disease State	Development Stage	Mutation	Phenotype	Case Detail	Control Detail	Growth Protocol	Treatment Protocol	Extract Protocol	Library Construction Protocol	Molecule Type	Library Layout	Strand-Specific	Library Strand	Spike-In	Strategy	Platform	Instrument Model	Cell Number	Reads Number	Gbases	AvgSpotLen1	AvgSpotLen2	Uniq Mapping Rate	Multiple Mapping Rate	Coverage Rate