Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

GEND000338: Joint-specific DNA transcriptome signatures in rheumatoid arthritis [RNA-seq]

BioProject ID:    PRJNA317757     Original Project ID:    GSE80072    

Strategy:
Species:
Tissue:
Healthy Condition:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
Disease
Environmental:
-
Spatial:
Tissue
Temporal:
-
Quality and Quantity:
RNA Type:
rRNA- RNA
Median Mapping Quality:
0.9658
Median Coverage:
4.35
Max Sequencing Length:
197
#Max Replicate:
5

Gene Expression Patterns

OR

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000338 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a
ID: GENDC000338 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v32 (GENCODE)
Data Processing:
  1. Circular RNA candidates identification: CIRI2
  2. Alternative (back-)splicing events of circular RNAs: CIRCexplorer2

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: