Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
Home Datasets Genes
Metadata
Species Projects Samples Publications
Tools
Online Analysis GEN Toolkit
Statistics Documentation Download Contact
Home Datasets
GEND000343
Basic Information Samples Transcriptomic Profiles Visualization

GEND000343: Single-cell RNA-seq of of dermal fibroblasts

BioProject ID:    PRJEB22698     Original Project ID:    ERA1101692     Paired Dataset(s):     GEND000340 GEND000341 GEND000342

Strategy:
Species:
Rattus norvegicus
Healthy Condition:
Cell Type:
Cell Number:
Biological Context:
Baseline:
Yes
Genetic:
-
Phenotypic:
Gender
Environmental:
-
Spatial:
Tissue
Temporal:
Time series
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.9525
Median Coverage:
0.06
Max Sequencing Length:
241
#Max Replicate:
1

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000343 Download
Reference Genome: Rnor_6.0.101
Genome Annotation: Rnor_6.0.101
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate