Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
Home Datasets Genes
Metadata
Species Projects Samples Publications
Tools
Online Analysis GEN Toolkit
Statistics Documentation Download Contact
Home Datasets
GEND000432
Basic Information Samples Transcriptomic Profiles Visualization

GEND000432: SARS-CoV-2 infection dynamics in lungs of African green monkeys

BioProject ID:    PRJNA658976     Original Project ID:    GSE156755    

Strategy:
Species:
Chlorocebus aethiops
Tissue:
Healthy Condition:
Cell Type:
Cell Line:
Development Stage:
Cell Number:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
Disease; Infection
Environmental:
Biotic Stress
Spatial:
Tissue
Temporal:
-
Quality and Quantity:
RNA Type:
Poly(A)+ RNA
Median Mapping Quality:
0.822
Median Coverage:
0.00
Max Sequencing Length:
127
#Max Replicate:
10

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000432 Download
Reference Genome: GCF_015252025.1_Vero_WHO_p1.0_genomic
Genome Annotation: GCF_015252025.1_Vero_WHO_p1.0_genomic
Data Processing:
  1. cellranger count --id=${id} --sample=${path}/${id} --transcriptome=${ref} --fastqs=${path}/${id} --localcores=$thread --localmem=64

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: