Gene Expression
Nebulas
Gene Expression NebulasSummary: The sequencing strategy was to organize BAC clones into contigs by FPC. These contigs were placed on a high-density genetic map. From this a minimum tiling path was chosen and the nucleotide sequence of these BACs was determined. PAC clones were used to fill in some gaps. The final sequence represents finished quality sequence that covers 95% of the 389 Mb genome.
Overall Design: Oryza sativa japonica leaf, panicle and root RNA-Seq
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| Growth Protocol: | - |
| Treatment Protocol: | - |
| Extract Protocol: | - |
| Library Construction Protocol: | - |
| Molecule Type: | - |
| Library Source: | |
| Library Layout: | PAIRED |
| Library Strand: | Forward |
| Platform: | ILLUMINA |
| Instrument Model: | Illumina HiSeq 2000 |
| Strand-Specific: | Specific |
| Data Resource | GEN Sample ID | GEN Dataset ID | Project ID | BioProject ID | Sample ID | Sample Name | BioSample ID | Sample Accession | Experiment Accession | Release Date | Submission Date | Update Date | Species | Race | Ethnicity | Age | Age Unit | Gender | Source Name | Tissue | Cell Type | Cell Subtype | Cell Line | Disease | Disease State | Development Stage | Mutation | Phenotype | Case Detail | Control Detail | Growth Protocol | Treatment Protocol | Extract Protocol | Library Construction Protocol | Molecule Type | Library Layout | Strand-Specific | Library Strand | Spike-In | Strategy | Platform | Instrument Model | Cell Number | Reads Number | Gbases | AvgSpotLen1 | AvgSpotLen2 | Uniq Mapping Rate | Multiple Mapping Rate | Coverage Rate |
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