Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

PRJNA314518: Comparison of gene expression between female Schistosoma mansoni heads and tails

Source: NCBI / GSE78967
Submission Date: Mar 07 2016
Release Date: Mar 08 2016
Update Date: May 15 2019

Summary: We report differences in gene expression between the anterior and posterior of female Schistosoma mansoni parasites

Overall Design: Three Biological Replicates

GEN Datasets:
GEND000168
Strategy:
Species:
Tissue:
Protocol
Growth Protocol: Schistosomes were recovered from mice 7-8 week post-infection
Treatment Protocol: -
Extract Protocol: RNA was extracted with Trizol and subjected to Dnase Treatment Illumina TruSeq Stranded RNA LT Kit
Library Construction Protocol: -
Sequencing
Molecule Type: rRNA- RNA
Library Source:
Library Layout: SINGLE
Library Strand: Forward
Platform: ILLUMINA
Instrument Model: Illumina HiSeq 2500
Strand-Specific: Specific
Samples
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
Data Resource GEN Sample ID GEN Dataset ID Project ID BioProject ID Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate
Publications
Identification of new markers for the Schistosoma mansoni vitelline lineage.
International journal for parasitology . 2016-04-04 [PMID: 27056273]