Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
Home Datasets Genes
Metadata
Species Projects Samples Publications
Tools
Online Analysis GEN Toolkit
Statistics Documentation Download Contact
Home Projects
PRJNA380239

PRJNA380239: Rice nucleosome and gene expression

Source: NCBI / SRP102413
Submission Date: -
Release Date: Mar 23 2018
Update Date: -

Summary: -

Overall Design: Determine the effect of phosphate starvation on nucleosome patterns and gene expression in rice

GEN Datasets:
GEND000301
Strategy:
Species:
Tissue:
Development Stage:
Protocol
Growth Protocol: Hydroponic
Treatment Protocol: Phosphate starvation for 24 hours; Full nutrient
Extract Protocol: -
Library Construction Protocol: -
Sequencing
Molecule Type: -
Library Source:
Library Layout: SINGLE
Library Strand: Forward
Platform: ILLUMINA
Instrument Model: Illumina HiSeq 2500
Strand-Specific: Specific
Samples
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
Data Resource GEN Sample ID GEN Dataset ID Project ID BioProject ID Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate
Publications
Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression.
BMC genomics . 2018-01-26 [PMID: 29373953]