Genome Variation Map

News: Genome Variation Map has been recommended by Cell Press to provide genetic variation repositories.

The Genome Variation Map (GVM) is a public data repository of genome variations, including single nucleotide polymorphisms (SNPs) and small insertions and deletions (InDels), with particular focuses on human as well as cultivated plants and domesticated animals.

Data Submission

Deposit data into GVM

Species

All species with genomic variants

Featured genomes

Problems or Questions?

Any question or suggestion, please feel free to contact us.

Email: gvm@big.ac.cn

QQ group: 468638108

------------------------- Variation Statistics -------------------------

Integrated reference variants for each species

Species

Projects

Samples

Variants

dSNPs

Associations

-------------- Submission Statistics --------------

Archived variant projects submitted by users

Species

Projects

123

Samples

123

DataVolume

Useful tools

● HapView

● VersionMap

● LeadSnp

● GeneFinder

● easyGWAS

Variants related resources

● GWAS Atlas

● European Variation Archive (EVA)

● ClinVar & dbSNP & dbVar

● National Metrology Data Center

● The Quartet Project

Species-specific Variations

● RCoV19 for SARS-CoV-2

● Sorghum Genome SNP Database

● Dog Genome SNP Database

● SugarcaneOmics

● SoyOmics

Newsmore>>

Tool 'VersionMap' for genome version conversion is online. (2025-08-10)

5.6M Variants for 1094 Panicum miliaceum (Broom millet) accessions are online. (2025-08-01)

How to Cite?

When you have successfully submitted data to GVM, please consider to use the following words to describe data deposition in your manuscript.

The variation data reported in this paper has been deposited in the Genome Variation Map [1] in National Genomics Data Center [2], China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences, under accession number GVMXXXXXX that can be publicly accessible at http://bigd.big.ac.cn/gvm/getProjectDetail?project=GVMXXXXXX

1. Genome Variation Map: a worldwide collection of genome variations across multiple species. Nucleic Acids Res 2021, 49(D1):D1186-D1191.[PMID=33170268].

2. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2024. Nucleic Acids Res 2024, 52(D1):D18-D32. [PMID=38018256].

3. GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals. Nucleic Acids Res 2023, 51(D1):D969–D976.[PMID=36263826].

GVM-supported Deposition

Data submissions to GVM have been reported by multiple high-profile journals. GVM has been designated as supported data repository by Springer Nature and Cell Press.