Dataset - HemAtlas

HemAtlas

HemSC00000033

Dataset Information

Omics:

Single cell RNA-seq

Omics Detail:

10x Genomics

Species:

Zebrafish

Organ:

CHT (caudal hematopoietic tissue)

Cell Number:

28777

Gene Number:

18808

Genome Reference:

GRCz11

Data Normalization:

SCT

Sequencing Platform:

10x Genomics

Cell Sorting Strategies:

kdrl:mCherry+ cells,CD41:GFP+ cells and double negative cells from the tails of 3.5 days post fertilization (dpf) and 4.5 dpf Tg (kdrl:mCherry/CD41:GFP) embryos

Publication

A single-cell resolution developmental atlas of hematopoietic stem and progenitor cell expansion in zebrafish.

Xia J, Kang Z, Xue Y, Ding Y, Gao S, Zhang Y, Lv P, Wang X, Ma D, Wang L, Han JJ, Liu F.
Volume:118 Issue:14 Proceedings of the National Academy of Sciences of the United States of America | 2021-04-01 | [33785593]

Visualization

Select Gene(s):

Please select gene!

Select Gene(s):

Species	Dataset	Gene	P.value	logFC	adj.P.val	Stage	Cell type	Cluster

Species	Stage	Dataset	Source	Target	Communication probability	P value	Ligand	Receptor	Interact Name

HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC00000033

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas Mapping developmental hematopoiesis across stages, species and models

HemSC00000033

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas
Mapping developmental hematopoiesis across stages, species and models