HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC00000035

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Mouse
Organ:
Placenta
Cell Number:
2726
Gene Number:
18020
Genome Reference:
mm10
Data Normalization:
SCT
Sequencing Platform:
10x Genomics
Cell Sorting Strategies:
For placentae of E10.0 and E11.0, 80,000 CD34+ cells were isolated by FACS and pooled together with 20,000 CD34- cells at a ratio of 4:1 to enrich hematopoietic and endothelial cells . For placentae of E12.0, about 20,000 CD34+ CD45+ hematopoietic progenitors, 20,000 CD34+ cells and 10,000 CD34- cells were separately isolated, and then pooled together with CD34- cells at a ratio of 2:2:1 to enrich hematopoietic progenitors, hematopoietic and endothelial cells, respectively.

Publication

De novo generation of macrophage from placenta-derived hemogenic endothelium.

Liang G, Zhou C, Jiang X, Zhang Y, Huang B, Gao S, Kang Z, Ma D, Wang F, Gottgens B, Wang H, Han JJ, Liu F.
Volume:56 Issue:14 Developmental cell | 2021-06-30 | [34197725]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

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Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name