Dataset - HemAtlas

HemAtlas

HemSC00000044

Dataset Information

Omics:

Single cell RNA-seq

Omics Detail:

10x Genomics

Species:

Zebrafish

Organ:

AGM (aorta-gonad-mesonephros)

Cell Number:

7518

Gene Number:

17330

Genome Reference:

GRCz11

Data Normalization:

SCT

Sequencing Platform:

10x Genomics

Cell Sorting Strategies:

Wild-type embryos expressing Tg(miR-223:KalTA4)ya362 Tg(5xUAS:eGFP)nkuasgfp1a Tg(kdrl:hrasmCherry)s896 fromtrunk tissue containing the AGM at 27 hpf

Publication

The N-glycome regulates the endothelial-to-hematopoietic transition.

Kasper DM, Hintzen J, Wu Y, Ghersi JJ, Mandl HK, Salinas KE, Armero W, He Z, Sheng Y, Xie Y, Heindel DW, Park EJ, Sessa WC, Mahal LK, Lebrilla C, Hirschi KK, Nicoli S.
Volume:370 Issue:6521 Science (New York, N.Y.) | 2020-12-03 | [33273096]

Visualization

Select Gene(s):

Please select gene!

Select Gene(s):

Species	Dataset	Gene	P.value	logFC	adj.P.val	Stage	Cell type	Cluster

Species	Stage	Dataset	Source	Target	Communication probability	P value	Ligand	Receptor	Interact Name

HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC00000044

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas Mapping developmental hematopoiesis across stages, species and models

HemSC00000044

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas
Mapping developmental hematopoiesis across stages, species and models