Dataset - HemAtlas

HemAtlas

HemSC00000045

Dataset Information

Omics:

Single cell RNA-seq

Omics Detail:

10x Genomics

Species:

Mouse

Organ:

AGM (aorta-gonad-mesonephros)

Cell Number:

9492

Gene Number:

17163

Genome Reference:

mm10

Data Normalization:

SCT

Sequencing Platform:

10x Genomics

Cell Sorting Strategies:

both enriched cell populations (ECs/T1preHSCs) and the whole AGM were processed

Publication

CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development.

Lummertz da Rocha E, Kubaczka C, Sugden WW, Najia MA, Jing R, Markel A, LeBlanc ZC, Dos Santos Peixoto R, Falchetti M, Collins JJ, North TE, Daley GQ.
Volume:24 Issue:4 Nature cell biology | 2022-04-12 | [35414020]

Visualization

Select Gene(s):

Please select gene!

Select Gene(s):

Species	Dataset	Gene	P.value	logFC	adj.P.val	Stage	Cell type	Cluster

Species	Stage	Dataset	Source	Target	Communication probability	P value	Ligand	Receptor	Interact Name

HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC00000045

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas Mapping developmental hematopoiesis across stages, species and models

HemSC00000045

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas
Mapping developmental hematopoiesis across stages, species and models