HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC00000067

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Human
Organ:
Bone marrow
Cell Number:
103228
Gene Number:
25369
Genome Reference:
GRCh38
Data Normalization:
SCT
Sequencing Platform:
10x Genomics
Cell Sorting Strategies:
CD45+ or CD45− cells from fetal bone marrow

Publication

Blood and immune development in human fetal bone marrow and Down syndrome.

Jardine L, Webb S, Goh I, Quiroga Londoño M, Reynolds G, Mather M, Olabi B, Stephenson E, Botting RA, Horsfall D, Engelbert J, Maunder D, Mende N, Murnane C, Dann E, McGrath J, King H, Kucinski I, Queen R, Carey CD, Shrubsole C, Poyner E, Acres M, Jones C, Ness T, Coulthard R, Elliott N, O'Byrne S, Haltalli MLR, Lawrence JE, Lisgo S, Balogh P, Meyer KB, Prigmore E, Ambridge K, Jain MS, Efremova M, Pickard K, Creasey T, Bacardit J, Henderson D, Coxhead J, Filby A, Hussain R, Dixon D, McDonald D, Popescu DM, Kowalczyk MS, Li B, Ashenberg O, Tabaka M, Dionne D, Tickle TL, Slyper M, Rozenblatt-Rosen O, Regev A, Behjati S, Laurenti E, Wilson NK, Roy A, Göttgens B, Roberts I, Teichmann SA, Haniffa M.
Volume:598 Issue:7880 Nature | 2021-09-29 | [34588693]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

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Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name