HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC01000084

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Zebrafish
Organ:
AGM (aorta-gonad-mesonephros)
Cell Number:
13987
Gene Number:
23229
Genome Reference:
GRCz11
Data Normalization:
SCT
Sequencing Platform:
Integrated data
Cell Sorting Strategies:
Integrated data

Publication

Activation of lineage competence in hemogenic endothelium precedes the formation of hematopoietic stem cell heterogeneity.

Xia J, Liu M, Zhu C, Liu S, Ai L, Ma D, Zhu P, Wang L, Liu F.
Volume: Issue: Cell research | 2023-04-04 | [37016019]

The N-glycome regulates the endothelial-to-hematopoietic transition.

Kasper DM, Hintzen J, Wu Y, Ghersi JJ, Mandl HK, Salinas KE, Armero W, He Z, Sheng Y, Xie Y, Heindel DW, Park EJ, Sessa WC, Mahal LK, Lebrilla C, Hirschi KK, Nicoli S.
Volume:370 Issue:6521 Science (New York, N.Y.) | 2020-12-03 | [33273096]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

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Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name