HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC01000085

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Zebrafish
Organ:
CHT (caudal hematopoietic tissue)
Cell Number:
27907
Gene Number:
20825
Genome Reference:
GRCz11
Data Normalization:
SCT
Sequencing Platform:
Integrated data
Cell Sorting Strategies:
Integrated data

Publication

A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis.

Xue Y, Liu D, Cui G, Ding Y, Ai D, Gao S, Zhang Y, Suo S, Wang X, Lv P, Zhou C, Li Y, Chen X, Peng G, Jing N, Han JJ, Liu F.
Volume:27 Issue:5 Cell reports | 2019-04-01 | [31042481]

A single-cell resolution developmental atlas of hematopoietic stem and progenitor cell expansion in zebrafish.

Xia J, Kang Z, Xue Y, Ding Y, Gao S, Zhang Y, Lv P, Wang X, Ma D, Wang L, Han JJ, Liu F.
Volume:118 Issue:14 Proceedings of the National Academy of Sciences of the United States of America | 2021-04-01 | [33785593]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

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Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name