HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC01000090

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Mouse
Organ:
Bone marrow
Cell Number:
16284
Gene Number:
23277
Genome Reference:
mm10
Data Normalization:
SCT
Sequencing Platform:
Integrated data
Cell Sorting Strategies:
Integrated data

Publication

Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization.

Baccin C, Al-Sabah J, Velten L, Helbling PM, Grünschläger F, Hernández-Malmierca P, Nombela-Arrieta C, Steinmetz LM, Trumpp A, Haas S.
Volume:22 Issue:1 Nature cell biology | 2019-12-23 | [31871321]

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris.

Tabula Muris Consortium, Overall coordination, Logistical coordination, Organ collection and processing, Library preparation and sequencing, Computational data analysis, Cell type annotation, Writing group, Supplemental text writing group, Principal investigators.
Volume:562 Issue:7727 Nature | 2018-10-03 | [30283141]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

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Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name