In mouse embryos, definitive hematopoietic stem and progenitor cells (HSPCs) are generated from hemogenic endothelial cells via endothelial-to-hematopoietic transition within the aorta–gonad–mesonephros (AGM) region at embryonic days (E) 10.5–11.5. Then, the nascent HSPCs arrive at fetal liver via circulation and undergo maturation, expansion, and differentiation after E12.5. Finally, the fetal HSPCs colonize into the bone marrow to maintain adult hematopoiesis after E15.5.
AGM (aorta-gonad-mesonephros) region is an evolutionarily-conserved hematopoietic site for definitive hematopoietic stem and progenitor cell (HSPC) generation. A specialized population of endothelial cells (ECs) in the ventral wall of dorsa aorta acquire hematopoietic fate to specify into hemogenic endothelial cells (HECs), and then produce HSPCs via endothelial-to-hematopoietic transition. AGM region also consists of perivascular cells, mesenchymal cells, and other niche cells.
Accession | Omics | Omics Detail | Publication |
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HemBK00000001 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-23122293 |
HemAT00000008 | Epigenomics | ATAC-seq | OLB-PM-29342143 |
HemSC00000021 | Single cell RNA-seq | 10x Genomics | OLB-PM-32392346 |
HemBK00000022 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-32499402 |
HemCP00000023 | Epigenomics | ChIP-seq | OLB-PM-32499402 |
HemSC00000045 | Single cell RNA-seq | 10x Genomics | OLB-PM-35414020 |
HemAT00000062 | Epigenomics | ATAC-seq | OLB-PM-38508181 |
HemSC00000063 | Single cell RNA-seq | 10x Genomics | OLB-PM-38508181 |
HemSC01000088 | Single cell RNA-seq | 10x Genomics | OLB-PM-35414020;38508181 |
HemSC01000091 | Single cell RNA-seq | 10x Genomics | OLB-PM-35414020;38508181;34341490;31871321;30283141 |
Placenta is an extra-embryonic hematopoietic organ for HSPC development in eutherian mammals. The cell components of placenta include endothelial cells, stromal cells, trophoblast cells, and primitive endodermal cells. The HSPC activity is detected in the vasculature niche after E10 in mouse placenta or 6 weeks in human placenta.
Accession | Omics | Omics Detail | Publication |
---|---|---|---|
HemBK00000001 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-23122293 |
HemSC00000034 | Single cell RNA-seq | 10x Genomics | OLB-PM-34197725 |
HemSC00000035 | Single cell RNA-seq | 10x Genomics | OLB-PM-34197725 |
HemSC00000036 | Single cell RNA-seq | Smart seq2 | OLB-PM-34197725 |
FL (fetal liver) is a transient hematopoietic organ for HSPC maturation, expansion, and differentiation in mammalian embryos. Nascent HSPCs reside in the fetal liver functional units, which are constituted by vascular endothelial cells, stromal cells, hepatoblasts, and macrophages and enriched with cytokines, chemokines, and growth factors.
Accession | Omics | Omics Detail | Publication |
---|---|---|---|
HemBK00000001 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-23122293 |
HemBK00000018 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-31851943 |
HemBK00000022 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-32499402 |
HemCP00000024 | Epigenomics | ChIP-seq | OLB-PM-32499402 |
HemST00000037 | Spatial transcriptome | 10× Visium | OLB-PM-34341490 |
HemST00000038 | Spatial transcriptome | 10× Visium | OLB-PM-34341490 |
HemST00000039 | Spatial transcriptome | 10× Visium | OLB-PM-34341490 |
HemST00000040 | Spatial transcriptome | 10× Visium | OLB-PM-34341490 |
HemSC00000041 | Single cell RNA-seq | 10x Genomics | OLB-PM-34341490 |
HemSC01000089 | Single cell RNA-seq | 10x Genomics | OLB-PM-34341490 |
HemSC01000091 | Single cell RNA-seq | 10x Genomics | OLB-PM-35414020;38508181;34341490;31871321;30283141 |
BM (bone marrow) is a hematopoietic site for adult HSPC maintenance in mammals. The cell components of bone marrow include endothelial cells, mesenchymal stromal cells, osteoblasts, osteoclasts, hematopoietic cells, and neurons. HSPCs locate at the perivascular niche, which is near trabecular bone and constituted by mesenchymal stromal cells and endothelial cells. In the bone marrow, HSPCs self-renew and differentiate into multilineage hematopoietic cells for the lifetime of the animal.
Accession | Omics | Omics Detail | Publication |
---|---|---|---|
HemBK00000001 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-23122293 |
HemSC00000011 | Single cell RNA-seq | 10x Genomics | OLB-PM-29588278 |
HemBK00000018 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-31851943 |
HemBK00000022 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-32499402 |
HemCP00000025 | Epigenomics | ChIP-seq | OLB-PM-32499402 |
HemSC00000049 | Single cell RNA-seq | 10x Genomics | OLB-PM-31871321 |
HemSC00000068 | Single cell RNA-seq | 10x Genomics | OLB-PM-30283141 |
HemSC00000069 | Single cell RNA-seq | Microwell-seq | OLB-PM-29474909 |
HemBK00000072 | Bulk RNA-seq | Bulk RNA-seq | OLB-PM-34706256 |
HemBK00000073 | Bulk RNA-seq | Bulk RNA seq | OLB-PM-38657191 |
HemSC00000074 | Single cell RNA-seq | 10x Genomics | OLB-PM-38657191 |
HemAT00000075 | Epigenomics | ATAC-seq | OLB-PM-34706256 |
HemCP00000076 | Epigenomics | ChIP-seq | OLB-PM-34706256 |
HemAT00000077 | Epigenomics | ATAC-seq | OLB-PM-38657191 |
HemCP00000078 | Epigenomics | H3K4me3 CUT&Tag | OLB-PM-38657191 |
HemSC01000090 | Single cell RNA-seq | 10x Genomics | OLB-PM-31871321;30283141 |
HemSC01000091 | Single cell RNA-seq | 10x Genomics | OLB-PM-35414020;38508181;34341490;31871321;30283141 |