IC4R Information Commons for Rice

IC4R-OSJ01G000100

Gene Summary

Gene Accession IC4R-OSJ01G000100
Symbol
ID Mapping LOC_Os01g01010,Os01g0100100
Gene Description Tbc Domain Containing Protein
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 7914
Chromosome Chromosome 1
Location 2903:10817
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0030234 Molecular Function enzyme regulator activity
GO:0007165 Biological Process signal transduction
GO:0006139 Biological Process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0009056 Biological Process catabolic process
GO:0005622 Cellular Component intracellular
GO:0012505 Cellular Component Endomembrane System
GO:0005096 Molecular Function Gtpase Activator Activity
GO:0017137 Molecular Function Rab Gtpase Binding
GO:0006886 Biological Process Intracellular Protein Transport
GO:0031338 Biological Process Regulation Of Vesicle Fusion
GO:0090630 Biological Process Activation Of Gtpase Activity
GO:0005634 Cellular Component Nucleus
GO:0003723 Molecular Function Rna Binding
GO:0006535 Biological Process Cysteine Biosynthetic Process From Serine
Plant Ontology
No related terms.
Environment Ontology
No related terms.
Trait Ontology
No related terms.

Functional Annotation

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Functional Categories
ID
Description
No matching records found

Transcripts

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mRNA ID
mRNA Length
GC Content
purine Content
CDS Length
CDS Sequence
Protein ID
Protein Length
Protein Sequence
No matching records found

RNA-Seq Evidence

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Run ID
Layout
Bases (MB)
Spots (Millions)
Tissues
Description
Release Date
No matching records found

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
15.795153 15.590343 26.62052 1.490106 0.407302 0.430575832 18
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

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