IC4R Information Commons for Rice

IC4R-OSJ01G000600

Gene Summary

Gene Accession IC4R-OSJ01G000600
Symbol
ID Mapping LOC_Os01g01060,Os01g0100700
Gene Description 40S Ribosomal Protein S5
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 1515
Chromosome Chromosome 1
Location 27136:28651
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

[View in new window]

Ontologies

Gene Ontology
GO:0005886 Cellular Component plasma membrane
GO:0000028 Biological Process Ribosomal Small Subunit Assembly
GO:0019843 Molecular Function Rrna Binding
GO:0003729 Molecular Function Mrna Binding
GO:0022627 Cellular Component Cytosolic Small Ribosomal Subunit
GO:0015935 Cellular Component Small Ribosomal Subunit
GO:0003723 Molecular Function Rna Binding
GO:0003735 Molecular Function Structural Constituent Of Ribosome
GO:0009536 Cellular Component plastid
GO:0005198 Molecular Function structural molecule activity
GO:0005829 Cellular Component cytosol
GO:0005618 Cellular Component cell wall
GO:0005773 Cellular Component vacuole
GO:0005575 Cellular Component Cellular Component
GO:0016020 Cellular Component membrane
GO:0005840 Cellular Component ribosome
GO:0006412 Biological Process translation
Plant Ontology
No related terms.
Environment Ontology
No related terms.
Trait Ontology
No related terms.

Functional Annotation

Loading, please wait...
Functional Categories
ID
Description
No matching records found

Transcripts

Loading, please wait...
mRNA ID
mRNA Length
GC Content
purine Content
CDS Length
CDS Sequence
Protein ID
Protein Length
Protein Sequence
No matching records found

RNA-Seq Evidence

Loading, please wait...
Run ID
Layout
Bases (MB)
Spots (Millions)
Tissues
Description
Release Date
No matching records found

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
185.924032 155.162159 542.925964 27.016542 0.716025 0.696231293 18
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments