IC4R Information Commons for Rice

IC4R-OSJ01G000800

Gene Summary

Gene Accession IC4R-OSJ01G000800
Symbol OsSPL, OsSPL1
ID Mapping LOC_Os01g01080,Os01g0100900
Gene Description Decarboxylase
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 5994
Chromosome Chromosome 1
Location 35480:41474
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0003824 Molecular Function catalytic activity
GO:0005488 Molecular Function binding
GO:0008152 Biological Process metabolic process
GO:0009987 Biological Process cellular process
GO:0009056 Biological Process catabolic process
GO:0006629 Biological Process lipid metabolic process
GO:0016020 Cellular Component membrane
GO:0005783 Cellular Component endoplasmic reticulum
GO:0008117 Molecular Function sphinganine
GO:0030149 Biological Process sphingolipid catabolic process
GO:0009407 Biological Process toxin catabolic process
GO:0016831 Molecular Function Carboxy-Lyase Activity
GO:0019752 Biological Process Carboxylic Acid Metabolic Process
GO:0030170 Molecular Function Pyridoxal Phosphate Binding
GO:0005789 Cellular Component Endoplasmic Reticulum Membrane
GO:0016021 Cellular Component Integral Component Of Membrane
Plant Ontology
No related terms.
Environment Ontology
No related terms.
Trait Ontology
No related terms.

Functional Annotation

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Functional Categories
ID
Description
No matching records found

Transcripts

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mRNA ID
mRNA Length
GC Content
purine Content
CDS Length
CDS Sequence
Protein ID
Protein Length
Protein Sequence
No matching records found

RNA-Seq Evidence

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Run ID
Layout
Bases (MB)
Spots (Millions)
Tissues
Description
Release Date
No matching records found

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
55.525308 48.920849 206.174255 0.0 0.833068 0.773669099 17
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments