IC4R Information Commons for Rice

IC4R-OSJ01G576800

Gene Summary

Gene Accession IC4R-OSJ01G576800
Symbol sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1, SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
ID Mapping LOC_Os01g66100,Os01g0883800
Gene Description Gibberellin 20 Oxidase 2
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 9418
Chromosome Chromosome 1
Location 38382364:38391782
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0005737 Cellular Component cytoplasm
GO:0046872 Molecular Function Metal Ion Binding
GO:0055114 Biological Process Oxidation-Reduction Process
GO:0016491 Molecular Function oxidoreductase activity
GO:0045544 Molecular Function gibberellin 20
GO:0003824 Molecular Function catalytic activity
GO:0007275 Biological Process multicellular organismal development
GO:0007165 Biological Process signal transduction
GO:0009908 Biological Process flower development
GO:0009791 Biological Process post
GO:0000003 Biological Process reproduction
GO:0006950 Biological Process response to stress
GO:0046688 Biological Process response to copper ion
GO:0016043 Biological Process cellular component organization
GO:0009653 Biological Process anatomical structure morphogenesis
GO:0016049 Biological Process cell growth
GO:0009719 Biological Process response to endogenous stimulus
GO:0008152 Biological Process metabolic process
GO:0009058 Biological Process biosynthetic process
GO:0009987 Biological Process cellular process
GO:0006629 Biological Process lipid metabolic process
GO:0009628 Biological Process response to abiotic stimulus
Plant Ontology
PO:0007022 Plant Structure Development Stage imbibition
PO:0007041 Plant Structure Development Stage inflorescence emergence stage
PO:0007089 Plant Structure Development Stage stem elongation stage
PO:0007115 Plant Structure Development Stage LP.04 four leaves visible
PO:1000518 Others seedling development stage
PO:0000003 Plant Anatomy whole plant
PO:0008037 Plant Anatomy seedling
PO:0009010 Plant Anatomy seed
PO:0020142 Plant Anatomy stem internode
PO:0025034 Plant Anatomy leaf
Environment Ontology
EO:0007261 Others copper nutrient regimen
EO:0007198 Others water environment
EO:0007069 Others gibberellic acid regimen
Trait Ontology
No related terms.

Functional Annotation

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Functional Categories
ID
Description
No matching records found

Transcripts

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mRNA ID
mRNA Length
GC Content
purine Content
CDS Length
CDS Sequence
Protein ID
Protein Length
Protein Sequence
No matching records found

RNA-Seq Evidence

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Run ID
Layout
Bases (MB)
Spots (Millions)
Tissues
Description
Release Date
No matching records found

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
9.936166 8.79304 23.270859 0.0 0.673916 0.606728217 17
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments