IC4R Information Commons for Rice

IC4R-OSJ03G280200

Gene Summary

Gene Accession IC4R-OSJ03G280200
Symbol ZFP36, Bsr-d1, bsr-d1
ID Mapping LOC_Os03g32230,Os03g0437200
Gene Description Zos3-12 - C2H2 Zinc Finger Protein
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 1101
Chromosome Chromosome 3
Location 18435989:18437090
Strand -
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0015979 Biological Process photosynthesis
GO:0009414 Biological Process Response To Water Deprivation
GO:0006979 Biological Process Response To Oxidative Stress
GO:0006355 Biological Process Regulation Of Transcription, Dna-Templated
GO:0006351 Biological Process Transcription, Dna-Templated
GO:0046872 Molecular Function Metal Ion Binding
GO:0005634 Cellular Component nucleus
GO:0003677 Molecular Function DNA binding
GO:0040007 Biological Process growth
GO:0009719 Biological Process response to endogenous stimulus
GO:0008150 Biological Process Biological Process
GO:0006139 Biological Process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0009058 Biological Process biosynthetic process
GO:0009628 Biological Process response to abiotic stimulus
GO:0006950 Biological Process response to stress
GO:0003676 Molecular Function nucleic acid binding
GO:0003700 Molecular Function transcription factor activity
GO:0005488 Molecular Function binding
Plant Ontology
PO:1000518 Others seedling development stage
PO:0000006 Plant Anatomy plant protoplast
PO:0009047 Plant Anatomy stem
PO:0025034 Plant Anatomy leaf
Environment Ontology
EO:0007105 Others abscisic acid regimen
Trait Ontology
No related terms.

Functional Annotation

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Functional Categories
ID
Description
No matching records found

Transcripts

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mRNA ID
mRNA Length
GC Content
purine Content
CDS Length
CDS Sequence
Protein ID
Protein Length
Protein Sequence
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RNA-Seq Evidence

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Run ID
Layout
Bases (MB)
Spots (Millions)
Tissues
Description
Release Date
No matching records found

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
5.961427 4.04753 21.224956 0.0 1.098384 0.761433088 13
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

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