MethBank
a database of DNA methylomes across a variety of species

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Samples

Oryza_sativa Rice Root

Name Experiment name Description Genome build Mapping rate Uniquely mapping rate Genome coverage C coverage Depth BS-con Rate
Ory_Root_7d-Pi Root_7d-Pi_r1 Root of plants after Pi starvation for 7 days replicate 1 RGSP-1.0 71.79% 64.00 99.51%
Ory_Root_7d-Pi Root_7d-Pi_r2 Root of plants after Pi starvation for 7 days replicate 2 RGSP-1.0 68.64%
Ory_Root_7d-Pi Root_7d-Pi_r3 Root of plants after Pi starvation for 7 days replicate 3 RGSP-1.0 71.19%
Ory_Root_7d+Pi Root_7d+Pi_r1 Root of plants continuously grown under Pi sufficient conditions for 7 days replicate 1 RGSP-1.0 67.56% 66.00 99.53%
Ory_Root_7d+Pi Root_7d+Pi_r2 Root of plants continuously grown under Pi sufficient conditions for 7 days replicate 2 RGSP-1.0 68.40%
Ory_Root_7d+Pi Root_7d+Pi_r3 Root of plants continuously grown under Pi sufficient conditions for 7 days replicate 3 RGSP-1.0 63.80%
Ory_Root_21d-Pi Root_21d-Pi_r1 Root of plants after Pi starvation for 21 days replicate 1 RGSP-1.0 66.56% 55.00 99.44%
Ory_Root_21d-Pi Root_21d-Pi_r2 Root of plants after Pi starvation for 21 days replicate 2 RGSP-1.0 66.19%
Ory_Root_21d-Pi Root_21d-Pi_r3 Root of plants after Pi starvation for 21 days replicate 3 RGSP-1.0 66.53%
Ory_Root_21d+Pi Root_21d+Pi_r1 Root of plants continuously grown under Pi sufficient conditions for 21 days replicate 1 RGSP-1.0 67.63% 57.00 99.46%
Ory_Root_21d+Pi Root_21d+Pi_r2 Root of plants continuously grown under Pi sufficient conditions for 21 days replicate 2 RGSP-1.0 61.91%
Ory_Root_21d+Pi Root_21d+Pi_r3 Root of plants continuously grown under Pi sufficient conditions for 21 days replicate 3 RGSP-1.0 63.92%
Ory_Root_21d-Pi_1d+Pi Root_21d-Pi_1d+Pi_r1 Root of plants resupplying Pi for 1 day after 21 days of starvation replicate 1 RGSP-1.0 71.84% 102.00 99.43%
Ory_Root_21d-Pi_1d+Pi Root_21d-Pi_1d+Pi_r2 Root of plants resupplying Pi for 1 day after 21 days of starvation replicate 2 RGSP-1.0 68.35%
Ory_Root_21d-Pi_1d+Pi Root_21d-Pi_1d+Pi_r3 Root of plants resupplying Pi for 1 day after 21 days of starvation replicate 3 RGSP-1.0 68.64%
Ory_Root_21d-Pi_3d+Pi Root_21d-Pi_3d+Pi_r1 Root of plants resupplying Pi for 3 days after 21 days of starvation replicate 1 RGSP-1.0 67.02% 78.00 99.48%
Ory_Root_21d-Pi_3d+Pi Root_21d-Pi_3d+Pi_r2 Root of plants resupplying Pi for 3 days after 21 days of starvation replicate 2 RGSP-1.0 65.11%
Ory_Root_21d-Pi_3d+Pi Root_21d-Pi_3d+Pi_r3 Root of plants resupplying Pi for 3 days after 21 days of starvation replicate 3 RGSP-1.0 64.82%
Ory_Root_22d-Pi Root_22d-Pi_r1 Root of plants after Pi starvation for 22 days replicate 1 RGSP-1.0 61.82% 80.00 99.75%
Ory_Root_22d-Pi Root_22d-Pi_r2 Root of plants after Pi starvation for 22 days replicate 2 RGSP-1.0 64.32%
Ory_Root_22d-Pi Root_22d-Pi_r3 Root of plants after Pi starvation for 22 days replicate 3 RGSP-1.0 67.47%
Ory_Root_22d+Pi Root_22d+Pi_r1 Root of plants continuously grown under Pi sufficient conditions for 22days replicate 1 RGSP-1.0 60.04% 78.00 99.76%
Ory_Root_22d+Pi Root_22d+Pi_r2 Root of plants continuously grown under Pi sufficient conditions for 22days replicate 2 RGSP-1.0 58.54%
Ory_Root_22d+Pi Root_22d+Pi_r3 Root of plants continuously grown under Pi sufficient conditions for 22days replicate 3 RGSP-1.0 61.12%
Ory_Root_24d-Pi Root_24d-Pi_r1 Root of plants after Pi starvation for 24 days replicate 1 RGSP-1.0 65.22% 80.00 99.55%
Ory_Root_24d-Pi Root_24d-Pi_r2 Root of plants after Pi starvation for 24 days replicate 2 RGSP-1.0 70.22%
Ory_Root_24d-Pi Root_24d-Pi_r3 Root of plants after Pi starvation for 24 days replicate 3 RGSP-1.0 67.52%
Ory_Root_24d+Pi Root_24d+Pi_r1 Root of plants continuously grown under Pi sufficient conditions for 24 days replicate 1 RGSP-1.0 69.20% 83.00 99.46%
Ory_Root_24d+Pi Root_24d+Pi_r2 Root of plants continuously grown under Pi sufficient conditions for 24 days replicate 2 RGSP-1.0 68.70%
Ory_Root_24d+Pi Root_24d+Pi_r3 Root of plants continuously grown under Pi sufficient conditions for 24 days replicate 3 RGSP-1.0 68.52%
Ory_Root_52d-Pi Root_52d-Pi_r1 Root of plants after Pi starvation for 52 days replicate 1 RGSP-1.0 61.00% 76.00 99.60%
Ory_Root_52d-Pi Root_52d-Pi_r2 Root of plants after Pi starvation for 52 days replicate 2 RGSP-1.0 63.26%
Ory_Root_52d-Pi Root_52d-Pi_r3 Root of plants after Pi starvation for 52 days replicate 3 RGSP-1.0 60.02%
Ory_Root_52d+Pi Root_52d+Pi_r1 Root of plants continuously grown under Pi sufficient conditions for 52 days replicate 1 RGSP-1.0 50.80% 81.00 99.60%
Ory_Root_52d+Pi Root_52d+Pi_r2 Root of plants continuously grown under Pi sufficient conditions for 52 days replicate 2 RGSP-1.0 55.62%
Ory_Root_52d+Pi Root_52d+Pi_r3 Root of plants continuously grown under Pi sufficient conditions for 52 days replicate 3 RGSP-1.0 56.13%
Ory_Root_52d_Re Root_52d_Re_r1 Root of plants resupplying Pi for 31 days after 21 days of starvation replicate 1 RGSP-1.0 58.02% 72.00 99.63%
Ory_Root_52d_Re Root_52d_Re_r2 Root of plants resupplying Pi for 31 days after 21 days of starvation replicate 2 RGSP-1.0 59.12%
Ory_Root_52d_Re Root_52d_Re_r3 Root of plants resupplying Pi for 31 days after 21 days of starvation replicate 3 RGSP-1.0 62.16%
Ory_Progeny_of_non-starved_parent Progeny_of_non-starved_parent_r1 Progeny of Pi sufficient parent replicate 1 RGSP-1.0 45.86% 113.00 99.76%
Ory_Progeny_of_non-starved_parent Progeny_of_non-starved_parent_r2 Progeny of Pi sufficient parent replicate 2 RGSP-1.0 45.93%
Ory_Progeny_of_non-starved_parent Progeny_of_non-starved_parent_r3 Progeny of Pi sufficient parent replicate 3 RGSP-1.0 45.84%
Ory_Progeny_of_non-starved_parent Progeny_of_non-starved_parent_r4 Progeny of Pi sufficient parent replicate 4 RGSP-1.0 45.36%
Ory_Progeny_of_non-starved_parent Progeny_of_non-starved_parent_r5 Progeny of Pi sufficient parent replicate 5 RGSP-1.0 39.27%
Ory_Progeny_of_Pi_starved_parent Progeny_of_Pi_starved_parent_r1 Progeny of Pi deprived parent replicate 1 RGSP-1.0 53.84% 127.00 99.71%
Ory_Progeny_of_Pi_starved_parent Progeny_of_Pi_starved_parent_r2 Progeny of Pi deprived parent replicate 2 RGSP-1.0 52.81%
Ory_Progeny_of_Pi_starved_parent Progeny_of_Pi_starved_parent_r3 Progeny of Pi deprived parent replicate 3 RGSP-1.0 50.08%
Ory_Progeny_of_Pi_starved_parent Progeny_of_Pi_starved_parent_r4 Progeny of Pi deprived parent replicate 4 RGSP-1.0 50.09%
Ory_Progeny_of_Pi_starved_parent Progeny_of_Pi_starved_parent_r5 Progeny of Pi deprived parent replicate 5 RGSP-1.0 48.15%