EPI_ISL_412974

Genome Information

Virus Strain Name hCoV-19/Italy/LAZ-INMI-SPL1/2020
Accession ID EPI_ISL_412974
Host Homo sapiens
Data Source GISAID
Sample Collection Date 2020-01-29
Location Italy / Lazio / Rome
Related ID
Lineage B (Version: 4.0.6)
Nuc.Completeness Complete
Quality Assessment 0/0/0/2/NO
Originating Lab
Submitting Lab
Create Date 2022-06-05 02:28:36

Clinic Records

Age NA
Gender NA
Occupation NA
Onset Date 2020-01-29
Admission date 2020-01-29
Travel history/ Contact history A Chinese tourist from Wuhan diagnosed at the end of January, who had visited Rome and not been in areas of Italy later found to be the initially affected areas of the epidemic in Lombardy
Severity of illness Serious
Patient Status Pneumonia, had onset of symptoms on 2020/1/29 and had been diagnosed in a hospital in Rome
Clinical symptoms and latent days The patient had an acute respiratory illness (pneumonia), showing a bilateral lung involvement with ground-glass opacity, requiring intensive care.
Clinical tests Nasopharyngeal swabs testing. Biological samples from patients had been confirmed as being SARS-CoV-2 positive.
Chronic Medical Illness NA
Co-infection with other respiratory pathogens NA
Comorbid conditions NA
Clinical medication and treatment NA
Physiological and biochemical indicators NA
Discharge date NA
Related publication Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe. [PMID: 32265007]

Genome Variation Statistics

Reference 2019-nCoV (MN908947.3)
Virus Strain Name hCoV-19/Italy/LAZ-INMI-SPL1/2020 (EPI_ISL_412974)
SNP No. 2
Insertion No. 0
Deletion No. 0
Indel No. 0
Similarity 99.99
Quality Assessment Grade A
Annotation Statistics 2(missense_variant:2)
File Download (GFF3)
The variation information in this file was calculated based on sequence EPI_ISL_412974.The original sequence can be obtained from GISAID's website.