Genome Sequences
Language / 语言
| Virus Strain Name | hCoV-19/Shandong/LY008-2/2020 |
| Accession ID | EPI_ISL_414941 |
| Host | Homo sapiens |
| Data Source | GISAID |
| Sample Collection Date | 2020-01-30 |
| Location | China / Shandong |
| Related ID | |
| Lineage | B (Version: 4.0.6) |
| Nuc.Completeness | Complete |
| Quality Assessment | 0/0/0/3/NO |
| Originating Lab | Beijing Institute of Microbiology and Epidemiology |
| Submitting Lab | Beijing Institute of Microbiology and Epidemiology |
| Create Date | 2020-03-17 14:48:10 |
| Age | 3 |
| Gender | F |
| Occupation | NA |
| Onset Date | 2020-01-26 |
| Admission date | 2020-01-27 |
| Travel history/ Contact history | Close contacts of Patients 7 |
| Severity of illness | Positive without sym |
| Patient Status | Recovered and were discharged to home isolation for 14 days |
| Clinical symptoms and latent days | Weak positive on 2020/1/27, posotive on 2020/1/29 no clinical symptoms before, during, or after hospitalization,chest CT showed on no significant abnormalities |
| Clinical tests | Chest CT images |
| Chronic Medical Illness | NA |
| Co-infection with other respiratory pathogens | NA |
| Comorbid conditions | NA |
| Clinical medication and treatment | NA |
| Physiological and biochemical indicators | NA |
| Discharge date | 2020-02-16 |
| Related publication | Transmission potential of asymptomatic and paucisymptomatic SARS-CoV-2 infections: a three-family cluster study in China. [PMID: 32319519] |
| Reference | 2019-nCoV (MN908947.3) |
| Virus Strain Name | hCoV-19/Shandong/LY008-2/2020 (EPI_ISL_414941) |
| SNP No. | 3 |
| Insertion No. | 0 |
| Deletion No. | 2 |
| Indel No. | 0 |
| Similarity | 99.98 |
| Quality Assessment Grade | A |
| Annotation Statistics | 5(synonymous_variant:1; intergenic_variant:2; missense_variant:2) |
| File Download (GFF3) |
| Variant ID | Ref | Alt | Gene Codons | Protein Amino Acid Change |
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