Genome Sequences
Language / 语言
| Virus Strain Name | hCoV-19/Hangzhou/ZJU-08/2020 |
| Accession ID | EPI_ISL_416473 |
| Host | Homo sapiens |
| Data Source | GISAID |
| Sample Collection Date | 2020-01-26 |
| Location | China / Zhejiang / Hangzhou |
| Related ID | |
| Lineage | A (Version: 4.0.6) |
| Nuc.Completeness | Complete |
| Quality Assessment | 0/0/3/13/Yes |
| Originating Lab | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China 310003 |
| Submitting Lab | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China 310003 |
| Create Date | 2020-03-23 07:08:31 |
| Age | 53 |
| Gender | M |
| Occupation | NA |
| Onset Date | |
| Admission date | |
| Travel history/ Contact history | Live in Wuhan |
| Severity of illness | Critical |
| Patient Status | Recover |
| Clinical symptoms and latent days | Fever,fatigue |
| Clinical tests | Ultra-deep sequencing of the isolated viral genomic RNA(Illumina Novaseq 6000 platform) |
| Chronic Medical Illness | NA |
| Co-infection with other respiratory pathogens | NA |
| Comorbid conditions | NA |
| Clinical medication and treatment | NA |
| Physiological and biochemical indicators | NA |
| Discharge date | 2020.02.19 |
| Reference | 2019-nCoV (MN908947.3) |
| Virus Strain Name | hCoV-19/Hangzhou/ZJU-08/2020 (EPI_ISL_416473) |
| SNP No. | 10 |
| Insertion No. | 2 |
| Deletion No. | 1 |
| Indel No. | 1 |
| Similarity | 99.95 |
| Quality Assessment Grade | B2 |
| Annotation Statistics | 14(synonymous_variant:2; intergenic_variant:11; missense_variant:1) |
| File Download (GFF3) |
| Variant ID | Ref | Alt | Gene Codons | Protein Amino Acid Change |
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