Genome Sequences
Language / 语言
| Virus Strain Name | hCoV-19/Italy/ABR-IZSGC-TE5056/2020 |
| Accession ID | EPI_ISL_418257 |
| Host | Homo sapiens |
| Data Source | GISAID |
| Sample Collection Date | 2020-03-17 |
| Location | Italy / Abruzzo |
| Related ID | |
| Lineage | B.1.1 (Version: 4.0.6) |
| Nuc.Completeness | Complete |
| Quality Assessment | 1/5/0/12/Yes |
| Originating Lab | Istituto Zooprofilattico Sperimentale dell'Abruzzo e Molise "G.Caporale" |
| Submitting Lab | Istituto Zooprofilattico Sperimentale dell'Abruzzo e Molise "G.Caporale" |
| Create Date | 2020-03-30 15:15:46 |
| Age | 75 |
| Gender | F |
| Occupation | NA |
| Onset Date | NA |
| Admission date | NA |
| Travel history/ Contact history | NA |
| Severity of illness | NA |
| Patient Status | NA |
| Clinical symptoms and latent days | NA |
| Clinical tests | Conventional nested RT-PCR |
| Chronic Medical Illness | NA |
| Co-infection with other respiratory pathogens | NA |
| Comorbid conditions | NA |
| Clinical medication and treatment | NA |
| Physiological and biochemical indicators | NA |
| Discharge date | NA |
| Related publication | A "One-Health" approach for diagnosis and molecular characterization of SARS-CoV-2 in Italy. [PMID: 32313828] |
| Reference | 2019-nCoV (MN908947.3) |
| Virus Strain Name | hCoV-19/Italy/TE5056/2020 (EPI_ISL_418257) |
| SNP No. | 12 |
| Insertion No. | 0 |
| Deletion No. | 2 |
| Indel No. | 0 |
| Similarity | 99.95 |
| Quality Assessment Grade | B2 |
| Annotation Statistics | 14(synonymous_variant:2; intergenic_variant:2; missense_variant:4; upstream_gene_variant:1; coding_sequence_variant:5) |
| File Download (GFF3) |
| Variant ID | Ref | Alt | Gene Codons | Protein Amino Acid Change |
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