Cloning and analysis of the spc ribosomal protein operon of Bacillus subtilis: comparison with the spc operon of Escherichia coli.

T M Henkin, S H Moon, L C Mattheakis, M Nomura
Author Information
  1. T M Henkin: Department of Biochemistry and Molecular Biology, Louisiana State University Medical Center, Shreveport 71130.

Abstract

A segment of Bacillus subtilis chromosomal DNA homologous to the Escherichia coli spc ribosomal protein operon was isolated using cloned E. coli rplE (L5) DNA as a hybridization probe. DNA sequence analysis of the B. subtilis cloned DNA indicated a high degree of conservation of spc operon ribosomal protein genes between B. subtilis and E. coli. This fragment contains DNA homologous to the promoter-proximal region of the spc operon, including coding sequences for ribosomal proteins L14, L24, L5, S14, and part of S8; the organization of B. subtilis genes in this region is identical to that found in E. coli. A region homologous to the E. coli L16, L29 and S17 genes, the last genes of the S10 operon, was located upstream from the gene for L14, the first gene in the spc operon. Although the ribosomal protein coding sequences showed 40-60% amino acid identity with E. coli sequences, we failed to find sequences which would form a structure resembling the E. coli target site for the S8 translational repressor, located near the beginning of the L5 coding region in E. coli, in this region or elsewhere in the B. subtilis spc DNA.

Associated Data

GENBANK | X15664

References

  1. J Biol Chem. 1986 Aug 25;261(24):11409-15 [PMID: 3733758]
  2. Methods Enzymol. 1983;101:20-78 [PMID: 6310323]
  3. Annu Rev Genet. 1986;20:297-326 [PMID: 2434021]
  4. J Biochem. 1987 Mar;101(3):817-20 [PMID: 3298224]
  5. J Mol Biol. 1987 Jul 20;196(2):333-45 [PMID: 3309351]
  6. J Mol Biol. 1987 Nov 5;198(1):91-107 [PMID: 3323531]
  7. Anal Biochem. 1983 Jul 1;132(1):6-13 [PMID: 6312838]
  8. Mol Gen Genet. 1983;192(1-2):124-30 [PMID: 6417453]
  9. Mol Gen Genet. 1983;192(3):386-90 [PMID: 6419023]
  10. Mol Gen Genet. 1984;193(2):364-9 [PMID: 6420647]
  11. Microbiol Rev. 1983 Dec;47(4):621-69 [PMID: 6363901]
  12. Gene. 1983 Dec;26(2-3):313-5 [PMID: 6323271]
  13. J Bacteriol. 1984 Aug;159(2):770-2 [PMID: 6430876]
  14. J Bacteriol. 1985 Feb;161(2):556-62 [PMID: 3918016]
  15. Gene. 1985;33(1):103-19 [PMID: 2985470]
  16. Nucleic Acids Res. 1985 Apr 11;13(7):2251-65 [PMID: 2987847]
  17. Microbiol Rev. 1985 Jun;49(2):158-79 [PMID: 2989674]
  18. Nucleic Acids Res. 1985 Jun 25;13(12):4521-6 [PMID: 3892488]
  19. Eur J Biochem. 1985 Aug 1;150(3):491-7 [PMID: 4018095]
  20. Gene. 1985;37(1-3):261-6 [PMID: 2414156]
  21. Mol Gen Genet. 1987 Oct;209(3):467-74 [PMID: 3123885]
  22. Mol Gen Genet. 1987 Nov;210(1):52-9 [PMID: 3323840]
  23. J Bacteriol. 1988 Oct;170(10):4484-92 [PMID: 3049533]
  24. Proc Natl Acad Sci U S A. 1989 Jan;86(2):448-52 [PMID: 2643112]
  25. J Mol Biol. 1988 Nov 20;204(2):295-307 [PMID: 2464691]
  26. J Mol Biol. 1988 Nov 20;204(2):309-29 [PMID: 2464692]
  27. Nucleic Acids Res. 1989 Feb 25;17(4):1780 [PMID: 2922301]
  28. J Bacteriol. 1989 May;171(5):2553-62 [PMID: 2496109]
  29. Mol Gen Genet. 1989 May;217(1):1-5 [PMID: 2671645]
  30. Nature. 1968 Aug 24;219(5156):793-9 [PMID: 4876933]
  31. Proc Natl Acad Sci U S A. 1973 Mar;70(3):944-8 [PMID: 4197630]
  32. Nucleic Acids Res. 1975 Feb;2(2):279-302 [PMID: 1091919]
  33. J Mol Evol. 1977 May 13;9(3):191-201 [PMID: 325217]
  34. Cell. 1978 Sep;15(1):215-29 [PMID: 151587]
  35. Proc Natl Acad Sci U S A. 1980 Apr;77(4):1837-41 [PMID: 6445562]
  36. Proc Natl Acad Sci U S A. 1980 Jun;77(6):3590-4 [PMID: 6251471]
  37. Nature. 1981 Jan 1;289(5793):89-91 [PMID: 6450328]
  38. Nucleic Acids Res. 1981 Apr 10;9(7):1757-64 [PMID: 6262737]
  39. Mol Gen Genet. 1982;185(2):239-44 [PMID: 6806564]
  40. Nucleic Acids Res. 1983 May 11;11(9):2599-616 [PMID: 6222285]
  41. J Bacteriol. 1986 Oct;168(1):65-71 [PMID: 3093467]

Grants

  1. R01 GM35959/NIGMS NIH HHS
  2. R29 GM40650/NIGMS NIH HHS

MeSH Term

Amino Acid Sequence
Bacillus subtilis
Base Sequence
DNA, Bacterial
Genes, Bacterial
Hydrogen Bonding
Molecular Sequence Data
Nucleic Acid Conformation
Operon
Promoter Regions, Genetic
Regulatory Sequences, Nucleic Acid
Restriction Mapping
Ribosomal Proteins
Sequence Homology, Nucleic Acid

Chemicals

DNA, Bacterial
Ribosomal Proteins

Word Cloud

Created with Highcharts 10.0.0colispcoperonEDNAsubtilisribosomalregionproteinBgenessequenceshomologousL5codingBacillusEscherichiaclonedanalysisL14S8locatedgenesegmentchromosomalisolatedusingrplEhybridizationprobesequenceindicatedhighdegreeconservationfragmentcontainspromoter-proximalincludingproteinsL24S14partorganizationidenticalfoundL16L29S17lastS10upstreamfirstAlthoughshowed40-60%aminoacididentityfailedfindformstructureresemblingtargetsitetranslationalrepressornearbeginningelsewhereCloningsubtilis:comparison

Similar Articles

Cited By