Inferring gene networks from time series microarray data using dynamic Bayesian networks.

Sun Yong Kim, Seiya Imoto, Satoru Miyano
Author Information
  1. Sun Yong Kim: Laboratory of DNA analysis, Human Genome Centre, Institute of Medical Science, University of Tokyo, Japan. sunk@ims.u-tokyo.ac.jp

Abstract

Dynamic Bayesian networks (DBNs) are considered as a promising model for inferring gene networks from time series microarray data. DBNs have overtaken Bayesian networks (BNs) as DBNs can construct cyclic regulations using time delay information. In this paper, a general framework for DBN modelling is outlined. Both discrete and continuous DBN models are constructed systematically and criteria for learning network structures are introduced from a Bayesian statistical viewpoint. This paper reviews the applications of DBNs over the past years. Real data applications for Saccharomyces cerevisiae time series gene expression data are also shown.

MeSH Term

Algorithms
Bayes Theorem
Computational Biology
Computer Simulation
Gene Expression Profiling
Gene Expression Regulation, Fungal
Mathematics
Models, Genetic
Oligonucleotide Array Sequence Analysis
Saccharomyces cerevisiae
Time Factors

Word Cloud

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