Applications of Bayesian statistical methods in microarray data analysis.

Dongyan Yang, Stanislav O Zakharkin, Grier P Page, Jacob P L Brand, Jode W Edwards, Alfred A Bartolucci, David B Allison
Author Information
  1. Dongyan Yang: Section on Statistical Genetics, University of Alabama at Birmingham, Birmingham, AL 35294, USA.

Abstract

Microarray technology allows one to measure gene expression levels simultaneously on the whole-genome scale. The rapid progress generates both a great wealth of information and challenges in making inferences from such massive data sets. Bayesian statistical modeling offers an alternative approach to frequentist methodologies, and has several features that make these methods advantageous for the analysis of microarray data. These include the incorporation of prior information, flexible exploration of arbitrarily complex hypotheses, easy inclusion of nuisance parameters, and relatively well developed methods to handle missing data. Recent developments in Bayesian methodology generated a variety of techniques for the identification of differentially expressed genes, finding genes with similar expression profiles, and uncovering underlying gene regulatory networks. Bayesian methods will undoubtedly become more common in the future because of their great utility in microarray analysis.

Grants

  1. P01 AG 11915/NIA NIH HHS
  2. P20 CA 093753/NCI NIH HHS
  3. P30 DK 56336/NIDDK NIH HHS
  4. R01 AG 011653/NIA NIH HHS
  5. R01 AG 018922/NIA NIH HHS
  6. R01 DK 56366/NIDDK NIH HHS
  7. R01 ES 09912/NIEHS NIH HHS
  8. T32 AR 007450/NIAMS NIH HHS
  9. U24 DK 058776/NIDDK NIH HHS

MeSH Term

Bayes Theorem
Gene Expression Profiling
Oligonucleotide Array Sequence Analysis

Word Cloud

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