Ab initio simulations of desorption and reactivity of glycine at a water-pyrite interface at "iron-sulfur world" prebiotic conditions.

Rodolphe Pollet, Christian Boehme, Dominik Marx
Author Information
  1. Rodolphe Pollet: Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780, Bochum, Germany. rpollet@drecam.cea.fr

Abstract

Glycine at the interface of a pyrite surface (001) FeS2, and bulk water at high pressure and temperature conditions relevant to the "iron-sulfur world" scenario of the origin of life is investigated by theoretical means. Car-Parrinello molecular dynamics is used in order to study the desorption process of the zwitterionic form of this amino acid using two different adsorption modes, where either only one or both oxygens of the carboxylate group are anchored to surface iron atoms. It is found that the formation of stabilizing hydrogen bonds plays a key role in the detachment process, leading to longer retention times for the bidentate adsorption mode. In addition, the chemical reactivity of this heterogeneous system is probed by calculating the Fukui functions as site-specific reactivity indices. The most prominent targets for both nucleophilic and electrophilic reactions to occur are surface atoms, whereas the reactivity of glycine is only slightly affected upon anchoring.

References

  1. Chembiochem. 2004 Nov 5;5(11):1558-66 [PMID: 15481029]
  2. Science. 1998 Jul 31;281(5377):670-2 [PMID: 9685253]
  3. Phys Rev Lett. 1985 Nov 25;55(22):2471-2474 [PMID: 10032153]
  4. Science. 1953 May 15;117(3046):528-9 [PMID: 13056598]
  5. Proc Natl Acad Sci U S A. 1994 May 10;91(10):4283-7 [PMID: 8183902]
  6. Science. 2002 Jun 14;296(5575):1982-3 [PMID: 12065824]
  7. Science. 2003 May 2;300(5620):745-6 [PMID: 12730584]
  8. J Chem Phys. 2004 Jan 22;120(4):1943-50 [PMID: 15268328]
  9. Prog Biophys Mol Biol. 1992;58(2):85-201 [PMID: 1509092]
  10. Proc Natl Acad Sci U S A. 1991 Nov;88:10014-7 [PMID: 11538487]
  11. Phys Rev A Gen Phys. 1988 Sep 15;38(6):3098-3100 [PMID: 9900728]
  12. Proc Natl Acad Sci U S A. 1990 Jan;87(1):200-4 [PMID: 2296579]
  13. Science. 2003 Aug 15;301(5635):938-40 [PMID: 12920291]

MeSH Term

Adsorption
Computer Simulation
Glycine
Iron
Models, Chemical
Sulfides
Water

Chemicals

Sulfides
Water
pyrite
Iron
Glycine

Word Cloud

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