New genus-specific primers for the PCR identification of novel isolates of the genus Streptomonospora.

Xiao-Yang Zhi, Shu-Kun Tang, Wen-Jun Li, Li-Hua Xu, Cheng-Lin Jiang
Author Information
  1. Xiao-Yang Zhi: Laboratory for Conservation and Utilization of Bio-Resources, Yunnan Institute of Microbiology, Yunnan University, Kunming, Yunnan, People's Republic of China.

Abstract

The halophilic actinomycete genus Streptomonospora, forming a distinct branch in the 16S rRNA gene phylogenetic tree adjacent to the genera Nocardiopsis and Thermobifida, was first proposed by Cui et al. to accommodate the species type Streptomonospora salina. During a biodiversity and taxonomic study on halophilic filamentous actinomycetes from a saline lake in western China, numerous new halophilic actinomycetes strains were isolated. To confirm whether they are members of the genus Streptomonospora, one set of genus-specific oligonucleotides was designed which allows rapid detection of members of the genus Streptomonospora by means of PCR amplification. The genus specificity of these primers was validated with reference strains as well as with wild-type isolates, which exhibited morphological characteristics common to this genus.

Associated Data

GENBANK | DQ656334; DQ656335; DQ656336; DQ656337; DQ667022; DQ667023; DQ667024; DQ667025; DQ667026; DQ667027; DQ667028; DQ667029; DQ667030; DQ667031; DQ667032; DQ667033; DQ667034; DQ667035; DQ667036; DQ667037; DQ667038; DQ667039; DQ667040; DQ667041; DQ667042; DQ667043; DQ667340; DQ667341; DQ667342; DQ667344; DQ667345; DQ667346; DQ667347

MeSH Term

Actinomycetales
Base Sequence
China
DNA Primers
DNA, Ribosomal
Genes, rRNA
Molecular Sequence Data
Phylogeny
Polymerase Chain Reaction
RNA, Ribosomal, 16S
Sequence Alignment
Water Microbiology

Chemicals

DNA Primers
DNA, Ribosomal
RNA, Ribosomal, 16S

Word Cloud

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