OpenLB
Open Library of Bioscience
Advanced Search
Genome biology
2007;8 (7): R129.

FlyMine: an integrated database for Drosophila and Anopheles genomics.

Rachel Lyne, Richard Smith, Kim Rutherford, Matthew Wakeling, Andrew Varley, Francois Guillier, Hilde Janssens, Wenyan Ji, Peter Mclaren, Philip North, Debashis Rana, Tom Riley, Julie Sullivan, Xavier Watkins, Mark Woodbridge, Kathryn Lilley, Steve Russell, Michael Ashburner, Kenji Mizuguchi, Gos Micklem
Author Information
  1. Rachel Lyne: Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
PMID: 17615057 DOI: 10.1186/gb-2007-8-7-r129

Abstract

FlyMine is a data warehouse that addresses one of the important challenges of modern biology: how to integrate and make use of the diversity and volume of current biological data. Its main focus is genomic and proteomics data for Drosophila and other insects. It provides web access to integrated data at a number of different levels, from simple browsing to construction of complex queries, which can be executed on either single items or lists.

References

  1. PLoS Biol. 2003 Oct;1(1):E12 [PMID: 14551910]
  2. Science. 2005 Aug 19;309(5738):1251-3 [PMID: 16020694]
  3. Bioinformatics. 2005 Apr 15;21(8):1747-9 [PMID: 15572468]
  4. Curr Biol. 2002 Nov 19;12(22):1952-8 [PMID: 12445390]
  5. Nat Biotechnol. 2005 Aug;23(8):951-9 [PMID: 16082366]
  6. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D390-5 [PMID: 15608223]
  7. Comput Appl Biosci. 1993 Feb;9(1):49-57 [PMID: 8435768]
  8. Science. 2004 Jan 23;303(5657):540-3 [PMID: 14704431]
  9. Nucleic Acids Res. 2002 Jan 1;30(1):149-51 [PMID: 11752278]
  10. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D556-61 [PMID: 16381931]
  11. Nat Rev Genet. 2003 May;4(5):337-45 [PMID: 12728276]
  12. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32 [PMID: 15608231]
  13. Genome Res. 2005 Mar;15(3):376-84 [PMID: 15710747]
  14. Nature. 2000 Nov 16;408(6810):325-30 [PMID: 11099033]
  15. Genome Res. 2004 Jun;14(6):1107-18 [PMID: 15173116]
  16. Genome Res. 2002 Jan;12(1):37-46 [PMID: 11779829]
  17. Nucleic Acids Res. 2001 Sep 1;29(17):3513-9 [PMID: 11522820]
  18. Genome Biol. 2005;6(5):R44 [PMID: 15892872]
  19. Genome Res. 2001 Dec;11(12):2120-6 [PMID: 11731503]
  20. Science. 2005 May 6;308(5723):826-33 [PMID: 15817814]
  21. BMC Bioinformatics. 2006 Mar 23;7:170 [PMID: 16556315]
  22. BMC Bioinformatics. 2005 Feb 21;6:34 [PMID: 15723693]
  23. Genes Dev. 2005 Aug 15;19(16):1861-70 [PMID: 16055650]
  24. Yeast. 2003 Nov;20(15):1291-306 [PMID: 14618567]
  25. J Struct Funct Genomics. 2002;2(2):71-81 [PMID: 12836664]
  26. Nature. 2000 Feb 10;403(6770):623-7 [PMID: 10688190]
  27. Nat Genet. 2000 May;25(1):25-9 [PMID: 10802651]
  28. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D187-91 [PMID: 16381842]
  29. Science. 2006 May 26;312(5777):1220-3 [PMID: 16645049]
  30. Nature. 2002 Jan 10;415(6868):180-3 [PMID: 11805837]
  31. Genome Biol. 2004;5(9):R63 [PMID: 15345047]
  32. Genome Biol. 2004;5(12):R96 [PMID: 15575970]
  33. Bioinformatics. 2006 Jun 1;22(11):1383-90 [PMID: 16533819]
  34. Mol Cell. 2003 Dec;12(6):1353-65 [PMID: 14690591]
  35. Genome Biol. 2002 Aug 23;3(9):RESEARCH0046 [PMID: 12225585]
  36. Nature. 2003 Jan 16;421(6920):231-7 [PMID: 12529635]
  37. Nature. 2002 Jan 10;415(6868):141-7 [PMID: 11805826]
  38. Science. 2002 Sep 27;297(5590):2270-5 [PMID: 12351791]
  39. Proc Int Conf Intell Syst Mol Biol. 1998;6:25-34 [PMID: 9783206]
  40. Nat Genet. 2001 Dec;29(4):482-6 [PMID: 11694880]
  41. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D476-80 [PMID: 15608241]
  42. Genome Res. 2004 Jan;14(1):160-9 [PMID: 14707178]
  43. Science. 2004 Feb 6;303(5659):832-5 [PMID: 14764878]
  44. Mol Cell. 2002 May;9(5):1133-43 [PMID: 12049748]
  45. Nat Genet. 2007 Jun;39(6):715-20 [PMID: 17534367]
  46. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D201-5 [PMID: 15608177]
  47. Genetics. 2004 Jun;167(2):797-813 [PMID: 15238529]
  48. Nature. 1999 Nov 4;402(6757):83-6 [PMID: 10573421]
  49. Science. 2002 Jan 4;295(5552):127-31 [PMID: 11778048]
  50. Science. 2003 Dec 5;302(5651):1727-36 [PMID: 14605208]
  51. Proc Natl Acad Sci U S A. 2000 Feb 1;97(3):1143-7 [PMID: 10655498]
  52. Brief Bioinform. 2002 Dec;3(4):389-404 [PMID: 12511067]
  53. Nucleic Acids Res. 2000 Jan 1;28(1):27-30 [PMID: 10592173]
  54. Bioinformatics. 2007 Jul 1;23(13):i337-46 [PMID: 17646315]
  55. Genome Res. 2002 Oct;12(10):1599-610 [PMID: 12368253]
  56. Brief Bioinform. 2002 Dec;3(4):331-41 [PMID: 12511062]
  57. Science. 2005 Aug 19;309(5738):1248-51 [PMID: 16020693]
  58. Science. 2002 Jan 11;295(5553):284-7 [PMID: 11786630]
  59. Nat Biotechnol. 2004 Feb;22(2):177-83 [PMID: 14755292]
  60. BMC Bioinformatics. 2006 Feb 15;7:70 [PMID: 16480510]
  61. Proc Natl Acad Sci U S A. 2001 Apr 10;98(8):4569-74 [PMID: 11283351]
  62. Bioinformatics. 2006 Feb 1;22(3):381-3 [PMID: 16303794]
  63. PLoS Biol. 2004 Dec;2(12):e379 [PMID: 15547975]
  64. Trends Genet. 2003 Oct;19(10):551-60 [PMID: 14550629]

Grants

  1. /Wellcome Trust
  2. G8225539/Medical Research Council
  3. 067205/Wellcome Trust

MeSH Term

Animals
Anopheles
Databases, Genetic
Drosophila
Genomics
Software
Journal Article Research Support, Non-U.S. Gov't
Article has an altmetric score of 21

Word Cloud

Created with Highcharts 10.0.0dataDrosophilaintegratedFlyMinewarehouseaddressesoneimportantchallengesmodernbiology:integratemakeusediversityvolumecurrentbiologicalmainfocusgenomicproteomicsinsectsprovideswebaccessnumberdifferentlevelssimplebrowsingconstructioncomplexqueriescanexecutedeithersingleitemslistsFlyMine:databaseAnophelesgenomics

Similar Articles

Cited By