OpenLB
Open Library of Bioscience
Advanced Search
Source code for biology and medicine
Sep 23, 2008;3 14.

Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis.

Joy Scaria, Aswathy Sreedharan, Yung-Fu Chang
Author Information
  1. Joy Scaria: Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, New York 14853, USA.
  2. Aswathy Sreedharan: Department of Plant Pathology, Cornell University, Ithaca, New York 14853, USA.
  3. Yung-Fu Chang: Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, New York 14853, USA.
PMID: 18811969 DOI: 10.1186/1751-0473-3-14

Abstract

BACKGROUND: Microarrays are becoming a very popular tool for microbial detection and diagnostics. Although these diagnostic arrays are much simpler when compared to the traditional transcriptome arrays, due to the high throughput nature of the arrays, the data analysis requirements still form a bottle neck for the widespread use of these diagnostic arrays. Hence we developed a new online data sharing and analysis environment customised for diagnostic arrays.
METHODS: Microbial Diagnostic Array Workstation (MDAW) is a database driven application designed in MS Access and front end designed in ASP.NET.
CONCLUSION: MDAW is a new resource that is customised for the data analysis requirements for microbial diagnostic arrays.

References

  1. Mol Cell Probes. 2008 Aug;22(4):238-43 [PMID: 18554865]
  2. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W308-14 [PMID: 18508806]
  3. J Clin Microbiol. 2007 Aug;45(8):2359-64 [PMID: 17553978]
  4. Bioinformatics. 2007 Jul 1;23(13):1700-1 [PMID: 17485432]
  5. J Vet Diagn Invest. 2007 Mar;19(2):161-7 [PMID: 17402610]
  6. Appl Environ Microbiol. 2007 Jan;73(2):563-71 [PMID: 17098911]
  7. Mol Cell Probes. 2007 Apr;21(2):152-60 [PMID: 17118627]
  8. J Appl Microbiol. 2006 Oct;101(4):754-63 [PMID: 16968287]
  9. Methods Enzymol. 2006;411:134-93 [PMID: 16939790]
  10. Antimicrob Agents Chemother. 2006 Jun;50(6):2038-41 [PMID: 16723563]
  11. J Microbiol Methods. 2006 Jun;65(3):488-502 [PMID: 16242802]
  12. BMC Bioinformatics. 2005;6:306 [PMID: 16371165]
  13. J Clin Microbiol. 2006 Apr;44(4):1495-501 [PMID: 16597882]
  14. Mol Cell Probes. 2006 Feb;20(1):42-50 [PMID: 16269235]
  15. Int J Antimicrob Agents. 2006 Feb;27(2):138-51 [PMID: 16427254]
  16. BMC Bioinformatics. 2005;6:287 [PMID: 16321157]
  17. Clin Chim Acta. 2006 Jan;363(1-2):106-19 [PMID: 16126187]
  18. J Bacteriol. 2004 Sep;186(17):5883-98 [PMID: 15317794]

Grants

  1. N01AI30054/NIAID NIH HHS
Journal Article

Word Cloud

Created with Highcharts 10.0.0arraysdiagnosticdataanalysisMDAWmicrobialrequirementsnewsharingcustomisedMicrobialDiagnosticArrayWorkstationdesignedBACKGROUND:MicroarraysbecomingpopulartooldetectiondiagnosticsAlthoughmuchsimplercomparedtraditionaltranscriptomeduehighthroughputnaturestillformbottleneckwidespreaduseHencedevelopedonlineenvironmentMETHODS:databasedrivenapplicationMSAccessfrontendASPNETCONCLUSION:resource:webserverarraystorage

Similar Articles

Cited By