Archiving next generation sequencing data.

Martin Shumway, Guy Cochrane, Hideaki Sugawara
Author Information
  1. Martin Shumway: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. shumwaym@ncbi.nlm.nih.gov

Abstract

Next generation sequencing platforms are producing biological sequencing data in unprecedented amounts. The partners of the International Nucleotide Sequencing Database Collaboration, which includes the National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI), and the DNA Data Bank of Japan (DDBJ), have established the Sequence Read Archive (SRA) to provide the scientific community with an archival destination for next generation data sets. The SRA is now accessible at http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi.ac.uk/ena from EBI and at http://www.ddbj.nig.ac.jp/sub/trace_sra-e.html from DDBJ. Users of these resources can obtain data sets deposited in any of the three SRA instances. Links and submission instructions are provided.

References

  1. Nucleic Acids Res. 2007 Jan;35(Database issue):D5-12 [PMID: 17170002]
  2. Nucleic Acids Res. 2008 Jan;36(Database issue):D13-21 [PMID: 18045790]
  3. Nucleic Acids Res. 2009 Jan;37(Database issue):D16-8 [PMID: 18927114]
  4. Nucleic Acids Res. 2009 Jan;37(Database issue):D19-25 [PMID: 18978013]
  5. Nucleic Acids Res. 2009 Jan;37(Database issue):D5-15 [PMID: 18940862]

Grants

  1. 085532/Wellcome Trust
  2. /Intramural NIH HHS

MeSH Term

Animals
Computational Biology
Computers
Databases, Genetic
Databases, Nucleic Acid
Europe
Genomics
Humans
Information Storage and Retrieval
Internet
Japan
National Library of Medicine (U.S.)
Sequence Analysis, DNA
Software
United States

Word Cloud

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