Coalescent-based, maximum likelihood inference in phylogeography. - National Genomics Data Center (CNCB-NGDC)

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Coalescent-based, maximum likelihood inference in phylogeography.

Alan R Templeton

Author Information

Alan R Templeton: Department of Biology, Washington University, St. Louis, MO 63130-4899, USA. temple_a@wustl.edu

PMID: 20070519 DOI: 10.1111/j.1365-294X.2009.04514.x

No abstract text available.

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P50 GM065509/NIGMS NIH HHS
P50 GM065509-03/NIGMS NIH HHS
2R01-GM02871924/NIGMS NIH HHS
P50-GM65509/NIGMS NIH HHS

Computer Simulation

Evolution, Molecular

Geography

Haplotypes

Likelihood Functions

Models, Statistical

Phylogeny

Sequence Analysis, DNA

Journal Article Research Support, N.I.H., Extramural Comment

Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.Inference of population admixture network from local gene genealogies: a coalescent-based maximum likelihood approach.STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies.Targeted maximum likelihood based causal inference: Part I.Targeted maximum likelihood based causal inference: Part II.Variational inference using approximate likelihood under the coalescent with recombination.On High-Dimensional Constrained Maximum Likelihood Inference.Maximum likelihood inference of reticulate evolutionary histories.Phylogenetic inference: linear invariants and maximum likelihood.Maximum likelihood estimation of population growth rates based on the coalescent.

Correcting approximate Bayesian computation.The Invertebrate Life of New Zealand: A Phylogeographic Approach.New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation.Three roads diverged? Routes to phylogeographic inference.In defence of model-based inference in phylogeography.Phylogeographic model selection leads to insight into the evolutionary history of four-eyed frogs.The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics.The impact of whole-genome sequencing on the reconstruction of human population history.