Fast methods for spatially correlated multilevel functional data.

Ana-Maria Staicu, Ciprian M Crainiceanu, Raymond J Carroll
Author Information
  1. Ana-Maria Staicu: Department of Statistics, North Carolina State University, 2311 Stinson Drive, Raleigh, NC 27695-8203, USA. staicu@stat.ncsu.edu

Abstract

We propose a new methodological framework for the analysis of hierarchical functional data when the functions at the lowest level of the hierarchy are correlated. For small data sets, our methodology leads to a computational algorithm that is orders of magnitude more efficient than its closest competitor (seconds versus hours). For large data sets, our algorithm remains fast and has no current competitors. Thus, in contrast to published methods, we can now conduct routine simulations, leave-one-out analyses, and nonparametric bootstrap sampling. Our methods are inspired by and applied to data obtained from a state-of-the-art colon carcinogenesis scientific experiment. However, our models are general and will be relevant to many new data sets where the object of inference are functions or images that remain dependent even after conditioning on the subject on which they are measured. Supplementary materials are available at Biostatistics online.

References

  1. J R Stat Soc Series B Stat Methodol. 2006 Apr 1;68(2):179-199 [PMID: 19759841]
  2. Biometrics. 2008 Mar;64(1):64-73 [PMID: 17608780]
  3. Biometrics. 2009 Sep;65(3):805-14 [PMID: 19173705]
  4. Ann Appl Stat. 2009 Mar 1;3(1):458-488 [PMID: 20221415]
  5. J Cell Physiol. 2000 Apr;183(1):18-27 [PMID: 10699962]
  6. Cell Prolif. 2000 Feb;33(1):1-18 [PMID: 10741640]
  7. Biometrics. 1994 Dec;50(4):1171-7 [PMID: 7786999]
  8. Ann Appl Stat. 2009;3(4):1467-1492 [PMID: 20428493]
  9. Biometrics. 2003 Sep;59(3):676-85 [PMID: 14601769]
  10. Biostatistics. 2003 Apr;4(2):297-312 [PMID: 12925523]
  11. Biometrics. 2002 Mar;58(1):121-8 [PMID: 11890306]
  12. Biometrics. 2001 Mar;57(1):253-9 [PMID: 11252607]

Grants

  1. CA 57030/NCI NIH HHS
  2. R01 NS 060910/NINDS NIH HHS
  3. R01 NS060910-02/NINDS NIH HHS
  4. R37 CA057030/NCI NIH HHS
  5. R01 NS060910/NINDS NIH HHS
  6. R01 NS060910-03/NINDS NIH HHS
  7. R01 NS060910-01A2/NINDS NIH HHS

MeSH Term

Algorithms
Analysis of Variance
Animals
Biometry
Butyrates
Colonic Neoplasms
Computer Simulation
Cyclin-Dependent Kinase Inhibitor p27
Diet
Humans
Likelihood Functions
Models, Statistical
Principal Component Analysis
Software
Statistics, Nonparametric

Chemicals

Butyrates
Cyclin-Dependent Kinase Inhibitor p27

Word Cloud

Created with Highcharts 10.0.0datasetsmethodsnewfunctionalfunctionscorrelatedalgorithmproposemethodologicalframeworkanalysishierarchicallowestlevelhierarchysmallmethodologyleadscomputationalordersmagnitudeefficientclosestcompetitorsecondsversushourslargeremainsfastcurrentcompetitorsThuscontrastpublishedcannowconductroutinesimulationsleave-one-outanalysesnonparametricbootstrapsamplinginspiredappliedobtainedstate-of-the-artcoloncarcinogenesisscientificexperimentHowevermodelsgeneralwillrelevantmanyobjectinferenceimagesremaindependentevenconditioningsubjectmeasuredSupplementarymaterialsavailableBiostatisticsonlineFastspatiallymultilevel

Similar Articles

Cited By (46)