Dataset of potential targets for Mycobacterium tuberculosis H37Rv through comparative genome analysis.

Siddiqui M Asif, Amir Asad, Ahmad Faizan, Malik S Anjali, Arya Arvind, Kapoor Neelesh, Kumar Hirdesh, Kumar Sanjay
Author Information
  1. Siddiqui M Asif: Department of Biotechnology, Meerut Institute of Engineering and Technology, Meerut. asifsiddiqui82@gmail.com

Abstract

Mycobacterium tuberculosis is the causative agent of the disease, tuberculosis and H37Rv is the most studied clinical strain. We use comparative genome analysis of Mycobacterium tuberculosis H37Rv and human for the identification of potential targets dataset. We used DEG (Database of Essential Genes) to identify essential genes in the H37Rv strain. The analysis shows that 628 of the 3989 genes in Mycobacterium tuberculosis H37Rv were found to be essential of which 324 genes lack similarity to the human genome. Subsequently hypothetical proteins were removed through manual curation. This further resulted in a dataset of 135 proteins with essential function and no homology to human.

Keywords

References

  1. J Biol Chem. 2002 Apr 12;277(15):12824-9 [PMID: 11823459]
  2. Nat Rev Immunol. 2006 Sep;6(9):699-704 [PMID: 16917508]
  3. Nat Rev Immunol. 2005 Oct;5(10):819-26 [PMID: 16200083]
  4. Science. 1998 Jun 5;280(5369):1607-10 [PMID: 9616124]
  5. J Biol Chem. 2000 Sep 8;275(36):28326-31 [PMID: 10869356]
  6. Mol Microbiol. 1995 Jan;15(2):235-45 [PMID: 7746145]
  7. Antimicrob Agents Chemother. 1994 Feb;38(2):238-42 [PMID: 8192450]
  8. Trends Microbiol. 2007 Jan;15(1):7-13 [PMID: 17141504]
  9. Curr Opin Chem Biol. 2004 Aug;8(4):371-7 [PMID: 15288246]
  10. Mol Microbiol. 2002 Oct;46(2):453-66 [PMID: 12406221]
  11. Trends Microbiol. 1994 Oct;2(10):411-5 [PMID: 7850211]
  12. Drug Discov Today. 2005 Jul 1;10(13):927-35 [PMID: 15993812]
  13. Microbiology (Reading). 1999 Jun;145 ( Pt 6):1359-1367 [PMID: 10411262]
  14. Nature. 1998 Jun 11;393(6685):537-44 [PMID: 9634230]
  15. Antimicrob Agents Chemother. 2000 Feb;44(2):326-36 [PMID: 10639358]

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